Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metatranscriptomes from the P2107 expedition of the California Current Ecosystem (CCE) Long-Term Ecological Research (LTER) program

ABSTRACT: Metatranscriptomes from the P2107 expedition of the California Current Ecosystem (CCE) Long-Term Ecological Research (LTER) program Metagenome

PROVIDER: PRJNA1258289 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Vastus lateralis muscle biopsy: post-expedition vs. pre-expedition

Project description:To define the skeletal muscle adaptations induced by exercise performed at high altitude hypoxia, we investigated if the gene expression profile of Vastus lateralis muscle was affected by 5000 m-above-sl-expedition. Two-condition experiment, Vastus lateralis muscle biopsy post-expedition vs Vastus lateralis muscle biopsy pre-expedition. Five volunteers/climbers. Biological replicates: 1 pre-expedition sample, 1 post-expedition sample.

2010-11-27 | E-GEOD-25618 | biostudies-arrayexpress

Vastus lateralis muscle biopsy: post-expedition vs. pre-expedition

2010-11-27 | GSE25618 | GEO

GNPS California Current Ecosystem P2107 Research Cruise

Project description:DDA non-targeted LC-MS/MS, PPL-SPE extracted marine organic matter. Positive Mode. Samples taken during the P2107 CCE LTER Research Cruise onboard the R/V Revelle.

2022-08-12 | MSV000090123 | GNPS

Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation

Project description:Alternative splicing (AS) generates isoform diversity critical for cellular identity and homeostasis, yet characterization of this diversity in single cells remains limited. We developed Expedition, a computational framework to categorize and visualize the heterogeneity of AS from single-cell transcriptomes. Expedition consists of (i) outrigger, a de novo splice graph transversal algorithm to detect AS from single cell RNA-seq; (ii) anchor, a Bayesian approach to assign splicing modalities and (iii) bonvoyage, using non-negative matrix factorization to visualize modality changes. By applying Expedition to single iPSCs undergoing neuron differentiation, we discover that 25% of AS exons exhibit bimodality and are flanked by longer and more conserved introns harboring distinct cis-regulatory motifs. Bimodal exons are highly dynamic during cellular transitions, preserve translatability, enriched in recently emerged genes and have conserved AS in mammals. Applying Expedition (http://github.com/YeoLab/Expedition) in single cells redefines our estimates and understanding of AS in evolution and biology.

2017-07-12 | GSE85908 | GEO

Metatranscriptomes

Project description:Metatranscriptomes

| PRJEB12284 | ENA

GNPS Student Cruise 2020 California Current Ecosystem

Project description:PPL extract from Student Cruise 2020 in the California Current Ecosystem.

2020-10-05 | MSV000086236 | GNPS

DNA-SIP experiment from Central California Current

Project description:DNA-SIP experiment from Central California Current Raw sequence reads

| PRJNA391559 | ENA

Microbial Metaproteome from the Western Atlantic Ocean DeepDOM KN210-04 Expedition

Project description:This dataset consists of 20 metaproteomic analyses of the Western Atlantic Ocean aboard the R/V Knorr KN210-04 DeepDOM expedition in 2013. Samples were collected by McLane pumps on GFF or GF75 filters, split, and frozen until analyses. Expedition metadata and co-sampled datasets are available at: https://www.bco-dmo.org/deployment/59057

2022-05-24 | PXD034035 | Pride

California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604)

Project description:California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) 18S_v9 Data

| PRJNA445287 | ENA

Euphotic marine water from the Southern California Current System

Project description:Euphotic marine water from the Southern California Current System Raw sequence reads

| PRJNA831817 | ENA