Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Clarireedia jacksonii

ABSTRACT: Clarireedia jacksonii overview

PROVIDER: PRJNA1259668 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33445427_1.fastq.gz	Fastqsanger.gz
	SRR33445427_2.fastq.gz	Fastqsanger.gz
	SRR33445428_1.fastq.gz	Fastqsanger.gz
	SRR33445428_2.fastq.gz	Fastqsanger.gz
	SRR33445429_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Clarireedia jacksonii

Project description:Transcriptome analysis of Clarireedia jacksonii LT586 treated with Bacillus cereus B694

| PRJNA1259167 | ENA

Clarireedia jacksonii strain:LWC10

Project description:Clarireedia jacksonii strain:LWC10 Genome sequencing and assembly

| PRJNA288036 | ENA

Clarireedia jacksonii strain:SH44

Project description:Clarireedia jacksonii strain:SH44 Genome sequencing and assembly

| PRJNA288039 | ENA

Clarireedia jacksonii strain:MB01 | isolate:MB01

Project description:Clarireedia jacksonii strain:MB01 | isolate:MB01 Genome sequencing and assembly

| PRJNA288040 | ENA

Clarireedia

Project description:Clarireedia Genome sequencing and assembly

| PRJNA851901 | ENA

Clarireedia homoeocarpa

Project description:Clarireedia homoeocarpa Genome sequencing and assembly

| PRJNA302176 | ENA

Amanita jacksonii TRTC168611

Project description:Amanita jacksonii TRTC168611 Genome sequencing and assembly

| PRJNA226613 | ENA

Genome-wide transcriptional analyses of <i>Clarireedia jacksonii</i> isolates associated with multi-drug resistance.

Project description:Emerging multidrug resistance (MDR) in Clarireedia spp. is a huge challenge to the management of dollar spot (DS) disease on turfgrass. Insight into the molecular basis of resistance mechanisms may help identify key molecular targets for developing novel effective chemicals. Previously, a MDR isolate (LT586) of C. jacksonii with significantly reduced sensitivities to propiconazole, boscalid, and iprodione, and a fungicide-sensitive isolate (LT15) of the same species were isolated from creeping bentgrass (Agrostis stolonifera L.). The present study aimed to further explore the molecular mechanisms of resistance by using genome-wide transcriptional analyses of the two isolates. A total of 619 and 475 differentially expressed genes (DEGs) were significantly down and upregulated in the MDR isolate LT586, compared with the sensitive isolate LT15 without fungicide treatment. Three hundreds and six and 153 DEGs showed significantly lower and higher expression in the MDR isolate LT586 than those in the sensitive isolate LT15, which were commonly induced by the three fungicides. Most of the 153 upregulated DEGs were xenobiotic detoxification-related genes and genes with transcriptional functions. Fifty and 17 upregulated DEGs were also commonly observed in HRI11 (a MDR isolate of the C. jacksonii) compared with the HRS10 (a fungicide-sensitive isolate of same species) from a previous study without and with the treatment of propiconazole, respectively. The reliability of RNA-seq data was further verified by qRT-PCR method using a few select potentially MDR-related genes. Results of this study indicated that there were multiple uncharacterized genes, possibly responsible for MDR phenotypes in Clarireedia spp., which may have important implications in understanding the molecular mechanisms underlying MDR resistance.

| S-EPMC10570728 | biostudies-literature

Oxalic Acid Production in <i>Clarireedia jacksonii</i> Is Dictated by pH, Host Tissue, and Xylan.

Project description:Dollar spot is caused by the fungus Clarireedia jacksonii and is the most common disease of golf course turfgrass in temperate climates. Oxalic acid (OA) is an important pathogenicity factor in other fungal plant pathogens, such as the dicot pathogen Sclerotinia sclerotiorum, but its role in C. jacksonii pathogenicity on monocot hosts remains unclear. Herein, we assess fungal growth, OA concentration, and pH change in potato dextrose broth (PDB) following incubation of C. jacksonii. In addition, OA production by C. jacksonii and S. sclerotiorum was compared in PDB amended with creeping bentgrass or common plant cell wall components (cellulose, lignin, pectin, or xylan). Our results show that OA production is highly dependent on the environmental pH, with twice as much OA produced at pH 7 than pH 4 and a corresponding decrease in PDB pH from 7 to 5 following 96 h of C. jacksonii incubation. In contrast, no OA was produced or changes in pH observed when C. jacksonii was incubated in PDB at a pH of 4. Interestingly, C. jacksonii increased OA production in response to PDB amended with creeping bentgrass tissue and the cell wall component xylan, a major component of grass cell walls. S. sclerotiorum produced large amounts of OA relative to C. jacksonii regardless of treatment, and no treatment increased OA production by this fungus, though pectin suppressed S. sclerotiorum's OA production. These results suggest that OA production by C. jacksonii is reliant on host specific components within the infection court, as well as the ambient pH of the foliar environment during its pathogenic development.

| S-EPMC7418575 | biostudies-literature

Clarireedia sp. CPB17

Project description:Clarireedia sp. CPB17 Genome sequencing and assembly

| PRJNA288032 | ENA