Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Multimodal GiaC - phenomic approach for microbiome - plant system profiling - proof of concept

PROVIDER: PRJNA1261255 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33513619.fastq.gz	Fastqsanger.gz
	SRR33513620.fastq.gz	Fastqsanger.gz
	SRR33513621.fastq.gz	Fastqsanger.gz
	SRR33513622.fastq.gz	Fastqsanger.gz
	SRR33513623.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 55

Similar Datasets

Project description:Enspyre Proof-of-Concept

| PRJNA1205559 | ENA

Oryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling

Project description:The contained data consist of Illumina HiSeq 2500 reads generated from restriction endonuclease digested genomic DNA of Oryza sativa ssp. indica used as proof of concept for plant-RRBS methylome profiling by bioinformatics analyses. Five biological repeats for an inbred control line and a derived epiline of the 4th generation where analysed using two restriction endonuclease combination (MspI-DpnII or MspI-ApekI).

2017-12-14 | E-MTAB-4626 | biostudies-arrayexpress

Rapid Assay of Individual Microbiome responses to drugs part1

Project description:We developed an approach named Rapid Assay of Individual Microbiome (RapidAIM) to screen xenobiotics against individual microbiomes, and conducted a proof-of-concept (POC) study on the use of RapidAIM. We tested 43 compounds against five individual microbiomes. The individual microbiomes are cultured in 96-well plates for 24 hours and the samples are then analyzed using a metaproteomics-based analytical approach to gain functional insight into the individual microbiomes responses following drug treatments.The tested compounds significantly affected overall microbiome abundance, microbiome composition and functional pathways at multiple taxonomic levels. The microbiome responses to berberine, metformin, diclofenac, fructooligosaccharide and most antibiotics were consistent among most individual microbiomes. Interestingly, most of our tested NSAIDs, statins, and histamine-2 blockers induced individually distinct responses. Our workflow offers an effective solution to systematically study the effects of many different compounds on individual microbiomes.

2020-05-26 | PXD012724 | Pride

miRNA profiling of human muscle and serum exosomes samples throughout TRAD and HITT training and detraining

Project description:The randomized, dose-response PHITE (Precision High-Intensity Training Through Epigenetics) clinical trial used molecular and phenomic profiling to compare responses to traditional (TRAD) endurance -plus resistance training (TRAD) and high-intensity tactical training (HITT). Serum exosomal-derived microRNAs were profiled from 90 individuals throughout a 12-week traditional (TRAD) or high-intensity tactical training (HITT) intervention and after a subsequent 4-week detraining period. miRNA data and associated molecular and phenomic profiling was used to (1) assess the affects of TRAD and HITT on physiological performance and body composition, (2) assess the integrated biocircuitry driving exercise adaptations and response heterogeneity and (3) define the effects of early-phase detraining.

2025-07-22 | GSE269533 | GEO

Project description:Proof of concept of massively PCR barcoding

| PRJNA765590 | ENA

Project description:Parasites modulate the gut-microbiome in insects: A proof-of-concept study

| PRJEB35155 | ENA

RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ

Project description:Proof-of-concept of a new method involving the limited digestion and subsequent ligation of intramolecular RNA structures in situ followed by deep sequencing Proof-of-concept of RPL in S. cerevisiae and H. sapiens tissue culture

2015-08-01 | E-GEOD-69472 | biostudies-arrayexpress

3D'omics: proof-of-concept mannan fibre swine trial

Project description:3D'omics: proof-of-concept mannan fibre swine trial

| PRJEB100724 | ENA

Profiling the intragenic toxicity determinants of the hok/Sok toxin-antitoxin system

Project description:Here, we adapted and improved our FASTBAC-Seq method originally designed in Helicobacter pylori to investigate T1TAs in the model organism Escherichia coli. Our approach combines a life and death selection with deep-sequencing to assess the killing capability of a toxin and obtain an overview of single-nucleotide substitutions suppressing the toxin expression or activity in absence of its antitoxin. As a proof of concept, we revisited the regulation of the plasmidic hok/Sok T1TA system.

2022-10-06 | GSE207195 | GEO

Single-cell gene expression profiling of a murine cell line with and without heat stress.

Project description:As a proof of concept of our approach to finding differentially expressed genes between cell fates predicted by image-based deep learning, we predicted the fates (survival and death) of heat-stressed cells and acquired those gene expression profiles.

2025-09-24 | GSE295778 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data