Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16S V1-V9 ONT data of feces: neonates

ABSTRACT: 16S V1-V9 ONT data of feces: neonates Metagenome

PROVIDER: PRJNA1268722 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33782800_1.fastq.gz	Fastqsanger.gz
	SRR33782801_1.fastq.gz	Fastqsanger.gz
	SRR33782802_1.fastq.gz	Fastqsanger.gz
	SRR33782803_1.fastq.gz	Fastqsanger.gz
	SRR33782804_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 107

Similar Datasets

16S V1-V9 ONT data of feces: neonates

Project description:16S V1-V9 ONT data of feces: neonates Metagenome

| PRJNA1234853 | ENA

Complete 16S rRNA gene (V1-V9) sequencing in vineyard topsoil and young leaf phyllosphere

Project description:Complete 16S rRNA gene (V1-V9) sequencing in vineyard topsoil and young leaf phyllosphere

| PRJEB79661 | ENA

V1 vs V1 FlhA knockout

Project description:Competitive hybridization of V1 variant of genome sequenced C. jejuni strain 11168 versus V1 variant in which flhA gene has been disrupted. Keywords: repeat sample

2004-03-03 | GSE530 | GEO

V1 vs V1 FliA knockout

Project description:Competive hybridization of V1 variant of genome sequenced C. jejuni strain 11168 versus V1 variant in which fliA gene encoding sigma 28 has been disrupted Keywords: repeat sample

2004-03-03 | GSE521 | GEO

Genome-wide CpG methylation in Hydra viridissima by ONT nanopore sequencing

Project description:Genome-wide 5-methylcytosine (5mC) profiling at CpG dinucleotides in Hydra viridissima using Oxford Nanopore long-read sequencing with Dorado base modification detection. Five ONT runs (one symbiotic, four aposymbiotic clone 2) were basecalled with Dorado sup,5mCG_5hmCG, aligned to Carnegie v1 genome assembly (JBWVZK000000000), and methylation quantified with modkit. Global CpG methylation is ~9-10%, bimodal (88% unmethylated, 7% fully methylated). Unique genomic regions show higher methylation (12%) than repetitive regions (7.5%).

2026-06-01 | GSE329152 | GEO

Agrobacterium sp. V1 strain:V1

Project description:Agrobacterium sp. V1 strain:V1 Genome sequencing and assembly

| PRJNA984195 | ENA

ONT ULK sequencing of a male cape dune mole-rat kidney sample

Project description:One ONT-ULK sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample in South African cape and sequenced in Toronto, Canada, using PacBio HiFi (89 Gb, read N50 = 18 Kb) and ONT-ULK (55 Gb, read N50 = 43 Kb) reads (contig N50 = 33 Mb, Compleasm S = 99%, QV = 71.0). This accession stores the ONT-ULK data for this assembly.

2026-08-05 | E-MTAB-17420 | biostudies-arrayexpress

Neonates Cow's milk protein allergy (CMPA) feces

Project description:Neonates Cow's milk protein allergy (CMPA) feces Raw sequence reads

| PRJNA1131917 | ENA

V1 variant vs. V26 variant

Project description:Competitive hybridization of V1 variant versus V26 variant of genome sequenced C. jejuni strain 11168 Keywords: repeat sample

2004-03-03 | GSE531 | GEO

SMF-ONT S2 clamp RNAi knockdown

Project description:Collection of 2 biological replicates of SMF-ONT performed in S2 cell incubated for 72hrs with RNAi targeting Clamp or LacZ (ctrl) transcripts. The footprinting protocol was adapted from Kleinendorst and Barzaghi et al., 2021 and optimised for long-read sequencing and high weight DNA extraction. In summary, 2.5 million intact nuclei per SMF reaction have been treated with successive incubation with GpC (M.CviPI) and CpG (M.SssI) methyltransferase enzymes. Footprinted DNA was extracted using the Quick-DNA HMW MagBead kit following the manufacturer protocol and using wide-bore tips. Nanopore ligation library (LSK114) preparation has been performed using 1µg of purified footprinted HWM DNA. Sequencing has been performed using promethION flow cells for the R10 chemistry (LSK114). The data have been analysed using the SMF-ONT nextflow pipeline (https://git.embl.de/grp-krebs/nf-smfont) using custom methylation call models.

2026-08-04 | E-MTAB-17018 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data