Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: NGS raw date

PROVIDER: PRJNA1269461 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33745462_1.fastq.gz	Fastqsanger.gz
	SRR33745462_2.fastq.gz	Fastqsanger.gz
	SRR33745463_1.fastq.gz	Fastqsanger.gz
	SRR33745463_2.fastq.gz	Fastqsanger.gz
	SRR33745464_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:RAW DATE

| PRJNA555725 | ENA

sciDLO Hi-C of Thp1-mono, Thp1-macro, and Thp1-M.tb

Project description:Raw date of sciDLO Hi-C libraries

2022-09-06 | GSE208045 | GEO

Transcriptome information of RAW-Rv3722c and RAW-Vector cell lines

Project description:RAW-Rv3722c and RAW-Vector cells were collected for RNA extraction and subject to transcriptome sequencing. Expression levels of all genes in the two cell lines were determined by Next Generation Sequencing (NGS)

2021-01-01 | GSE157419 | GEO

Keteleeria davidiana

Project description:Raw date of Keteleeria

| PRJNA1057873 | ENA

MiRNA sequencing in raw and processed human breast milk

Project description:We report the application of miRNA next generation sequencing (NGS) for the analysis of impact of processing on miRNA in human breast milk, donated by 3 volunteers. MiRNA content of total and exosomal fraction was compared between unprocessed milk and sample subjected to either Holder (thermal) pasteurization (HoP) or elevated pressure processing (HPP). NGS reads were mapped to miRBase in order to obtain miRNA counts. Then, we analyzed differences in the miRNA abundance and function between raw and processed material. It was observed that both processing methods reduce number of miRNA reads and HoP is significantly more detrimental to miRNA than HPP.

2019-12-19 | GSE142282 | GEO

Comparison of microRNA Profiling Platforms (HTS)

Project description:Global miRNA expression profiling of human malignancies is gaining popularity in both basic and clinically driven research. But to date, the majority of such analyses have used microarrays and quantitative real-time PCR. With the introduction of digital count technologies, such as next-generation sequencing (NGS) and the NanoString nCounter System, we have at our disposal, many more options. To make effective use of these different platforms, the strengths and pitfalls of several miRNA profiling technologies were assessed, including a microarray platform, NGS technologies and the NanoString nCounter System. These results were compared to gold-standard quantitative real-time PCR.

2013-10-22 | GSE51507 | GEO

Comparison of microRNA Profiling Platforms (BeadChip)

2013-10-22 | GSE51501 | GEO

Genome-wide maps of hnRNP UL1 binding on DNA during the inflammatory process.

Project description:We performed ChIP-seq with antibody targeting hnRNP UL1 at 0, 4h and 10h following LPS stimulation in RAW 264.7 cells. NGS and data analysis were done by Novogen China Co. Ltd. We found that hnRNP UL1 binds to chromatin DNA broadly and dynamically during inflammatory response. hnRNP UL1 binds to genes' promoter mainly. And NF-κB binding sites (κB sites) were significantly enriched in the motifs bound by hnRNP UL1.

2022-06-01 | GSE196201 | GEO

11p11.12p12 duplication in a family with intellectual disability and craniofacial anomalies

Project description:Potocki-Shaffer syndrome (PSS) is a rare contiguous gene deletion syndrome marked by haploinsufficiency of genes in chromosomal region 11p11.2p12. Approximately 50 cases of PSS have been reported; however, a syndrome with a PSS-like clinical phenotype caused by 11p11.12p12 duplication has not yet been reported. We first report the 11p11.12p12 duplication in a family with intellectual disability and craniofacial anomalies. 11p11.12p12 duplication syndrome was identified by karyotype analysis. Next-generation sequencing (NGS) analysis clarified the location of the chromosomal variations, which was confirmed by chromosome microarray analysis (CMA). Whole-exome sequencing (WES) was performed to exclude single nucleotide variations (SNVs). The raw data of NGS analysis and WES have been submitted to SRA, the accession number is PRJNA713823.

2021-03-24 | GSE169469 | GEO