Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aquaculture pond sediment

ABSTRACT: Aquaculture pond sediment Raw sequence reads

PROVIDER: PRJNA1275853 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33953000_1.fastq.gz	Fastqsanger.gz
	SRR33953000_2.fastq.gz	Fastqsanger.gz
	SRR33953001_1.fastq.gz	Fastqsanger.gz
	SRR33953001_2.fastq.gz	Fastqsanger.gz
	SRR33953002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 162

Similar Datasets

Aquaculture pond sediment

Project description:Aquaculture pond sediment Raw sequence reads

| PRJNA1274850 | ENA

Pond sediment

Project description:Pond sediment Raw sequence reads

| PRJNA484117 | ENA

freshwater sediment metagenome

Project description:freshwater aquaculture pond sediment Raw sequence reads

| PRJNA307297 | ENA

litopenaeus vannamei culture pond sediment

Project description:litopenaeus vannamei culture pond sediment Raw sequence reads

| PRJNA646333 | ENA

sediment of king carp farming pond

Project description:sediment of king carp farming pond Raw sequence reads

| PRJNA1371597 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

aquaculture metagenome

Project description:aquaculture metagenome Raw sequence reads

| PRJNA1028170 | ENA

aquaculture water

Project description:aquaculture water Raw sequence reads

| PRJNA1260720 | ENA

aquaculture metagenome

Project description:aquaculture metagenome Raw sequence reads

| PRJNA1072069 | ENA

aquaculture metagenome

Project description:aquaculture metagenome Raw sequence reads