Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Flavobacterium johnsoniae strain:UMJL46B | isolate:UMJL46B | cultivar:Triticum aestivum (wheat

ABSTRACT: Flavobacterium johnsoniae strain:UMJL46B | isolate:UMJL46B | cultivar:Triticum aestivum (wheat Genome sequencing

PROVIDER: PRJNA1277483 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT–PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions.

2023-04-04 | GSE192518 | GEO

Triticum aestivum L. (Wheat) MS2

Project description:MS2 data for two Indian varieties of Triticum aestivum L. (Wheat). P1 to P5 files represent MS2 data in positive ESI mode whereas N1 to N5 files represent MS2 data in negative ESI mode.

2023-04-23 | MSV000091783 | MassIVE

Triticum aestivum cultivar:wheat

Project description:Triticum aestivum cultivar:wheat Genome sequencing

| PRJNA1045831 | ENA

Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [alien substitution lines]

Project description:Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [alien substitution lines]

2023-06-30 | MSV000092320 | MassIVE

Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [nullisomic-tetrasomic lines]

Project description:Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [nullisomic-tetrasomic lines]

2023-06-23 | MSV000092256 | MassIVE

Flavobacterium johnsoniae

Project description:Comparison between virulent strain Flavobacterium johnsoniae M168 and attenuated strain Flavobacterium johnsoniae M170

| PRJNA408004 | ENA

Flavobacterium johnsoniae

Project description:Comparison between virulent strain Flavobacterium johnsoniae M168 and attenuated strain Flavobacterium johnsoniae M170

| PRJNA408030 | ENA

Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [alien substitution lines]

Project description:Metabolism of halauxifen-methyl is regulated by genes on chromosome 5A of wheat (Triticum aestivum L.) [alien substitution lines] experiment 1

2023-06-30 | MSV000092323 | MassIVE

Proteomic analysis of Flavobacterium johnsoniae

Project description:The soil bacterium Flavobacterium johnsoniae was grown on agar plates with or without pectin,bacteria were harvested, lysed, and subjected to LC-MS/MS analysis

2021-04-12 | PXD023649 | Pride

Triticum aestivum cultivar:Wheat

Project description:Triticum aestivum cultivar:Wheat Raw sequence reads

| PRJNA376820 | ENA