Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shotgun metagenomic sequencing of pig manure samples

ABSTRACT: Shotgun metagenomic sequencing of pig manure samples Raw sequence reads

PROVIDER: PRJNA1279599 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR34069000_1.fastq.gz	Fastqsanger.gz
	SRR34069001_1.fastq.gz	Fastqsanger.gz
	SRR34069002_1.fastq.gz	Fastqsanger.gz
	SRR34069003_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 23

Similar Datasets

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9191 | biostudies-arrayexpress

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

Buck metagenomic sequencing for manure composting samples

Project description:Buck metagenomic raw reads for manure composting samples

| PRJNA842451 | ENA

pig manure

Project description:pig manure Raw sequence reads

| PRJNA1093254 | ENA

Pig manure

Project description:Pig manure Raw sequence reads

| PRJNA1118426 | ENA

Shotgun metagenomic data from SeqOccIn project

Project description:Shotgun metagenomic data from mock communities and pig faeces samples

| PRJEB60080 | ENA

Viral metagenomic raw reads for manure composting samples

Project description:Viral metagenomic raw reads for manure composting samples

| PRJNA842538 | ENA

Pig manure and chicken manure

Project description:Pig manure and chicken manure Raw sequence reads

| PRJNA730213 | ENA

pig manure compost

Project description:pig manure compost Raw sequence reads

| PRJNA675156 | ENA

H3Africa ReMAC Shotgun Metagenomic

Project description:Shotgun metagenomic sequencing data for nasopharyngeal colonization dynamics with Streptococcus pneumoniae and associated antimicrobial-resistance in a South African birth cohort.

| EGAD00001006244 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data