North American River Otter, Lontra canadensis
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA1281117 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:The semi-aquatic North American river otter (Lontra canadensis) has the unique challenge of navigating slippery algae-coated rocks. Unlike other river otter species, each rear paw of the North American river otter has a series of soft, circular, and keratinized plantar pads similar to the felt pads on the boots of fly fishermen. Surrounding these soft pads is a textured epidermal layer. In this combined experimental and numerical study, we investigate the influence of the plantar pads and surrounding skin on the otter's grip. We filmed an otter walking and performed materials testing and histology on preserved otter paws. We present experiments and numerical modeling of how the otter paw may help evacuate water when contacting the river bed. We hope this study will draw interest into natural amphibious grip mechanisms for use in sports and the military.
| S-EPMC11668502 | biostudies-literature
Project description:RNAseq from the following tissue samples: skeletal muscle; kidney; spleen; ovaries; placenta; castor gland; tail; toe webbing; whole blood; brain; lung; liver; heart; stomach; tongue; intestine
2019-07-02 | E-MTAB-8038 | biostudies-arrayexpress
Project description:RNAseq from Illumina MiSeq 75bp paired end for transcriptome assembly. The following tissue samples were pooled: skeletal muscle; kidney; spleen; ovaries; placenta; castor gland; tail; toe webbing; whole blood; brain; lung; liver; heart; stomach; tongue; intestine
2017-12-24 | E-MTAB-6258 | biostudies-arrayexpress
Project description:Fur is a common biomarker of environmental mercury (Hg) exposure. Further, there are well-established relationships between total mercury (THg) in fur and organs. However, these models assumed that THg is uniformly distributed across the fur in a pelt. In this study, we assess the distribution of THg and methylmercury (MeHg) across the pelts of four river otters (Lontra canadensis). THg concentrations were measured in the topcoat (n = 95) and undercoat fur (n = 95). MeHg was measured in a subset of these samples (n = 10). Patterns of THg and MeHg were explored using cluster analyses and ANOVAs. Significant differences existed between THg in topcoat and undercoat and between anatomical region (head/body/tail/legs) and fur regions (dorsal/ventral/furline). The cluster analysis showed significant THg clusters in undercoat fur and to a lesser extent topcoat fur. Further, the error rate for predicting internal THg is lowest in the forebody region of the topcoat, thus, making this the optimal region to sample for biomonitoring. Fur samples taken outside of this region could result in prediction error as high as 140% when estimating internal organ THg. The ratio of MeHg in THg in topcoat fur was measured at 95.7 ± 3.4% indicating THg concentrations can be used to assess MeHg exposure.
| S-EPMC6397270 | biostudies-literature
Project description:The genus Dracunculus contains numerous species of subcutaneous parasites of mammals and reptiles. In North America, there are at least three mammal-infecting species of Dracunculus. Reports of Dracunculus infections have been reported from river otters (Lontra canadensis) since the early 1900s; however, little is known about the species infecting otters or their ecology. Most reports of Dracunculus do not have a definitive species identified because females, the most common sex found due to their larger size and location in the extremities of the host, lack distinguishing morphological characteristics, and few studies have used molecular methods to confirm identifications. Thus, outside of Ontario, Canada, where both D. insignis and D. lutrae have been confirmed in otters, the species of Dracunculus in river otters is unknown. In the current study, molecular characterization of nematodes from river otters revealed a high diversity of Dracunculus species. In addition to confirming D. insignis infections, two new clades were detected. One clade was a novel species in any host and the other was a clade previously detected in Virginia opossums (Didelphis virginiana) from the USA and a domestic dog from Spain. No infections with D. lutrae were detected and neither new lineage was genetically similar to D. jaguape, which was recently described from a neotropical otter (Lontra longicaudis) from Argentina. These data also indicate that Dracunculus spp. infections in otters are widespread throughout Eastern North America. Currently the life cycles for most of the Dracunculus spp. infecting otters are unknown. Studies on the diversity, life cycle, and natural history of Dracunculidae parasites in wildlife are important because the related parasite, D. medinensis (human Guinea worm) is the subject of an international eradication campaign and there are increasing reports of these parasites in new geographic locations and new hosts, including new species in humans and domestic dogs.
| S-EPMC10955650 | biostudies-literature
Project description:Fine-scale Population Structure of North American Arabidopsis Reveals Multiple Sources of Introduction from Across Eurasia
| PRJEB42417 | ENA
Project description:Eurasian otters prefer to prey on religious released non-native fish on the Qinghai-Tibetan Plateau
| PRJNA981302 | ENA
Project description:Cardiomyopathy is a heart muscle disease and diagnosis relies on radiography and echocardiography, while blood-based markers are lacking. Development of a non-invasive test would be useful when imaging is not possible (e.g., prenatal diagnosis). In southern sea otters (Enhydra lutris nereis), cardiomyopathy is a prevalent cause of mortality and antemortem diagnosis is challenging. Sea otters requiring clinical care are at significant anesthetic risk if cardiomyopathy is present. A blood-based assay would improve triage decisions, case management, and treatment protocols to safeguard against co-morbidities. With support from the Oiled Wildlife Care Network, we analyzed undepleted sea otter serum using mass spectrometry-based proteomics. Though the larger sample set included 63 sera (that included a validation set of 22 sera with class labels blinded to the data collector), we a priori compared only samples from wild otters. Additionally, we generated proteomic data for four heat tissues with paired sera. These results demonstrate the utility of proteomic analysis, offer a glimpse into the sea otter proteome, and serve as a reference data set for relative protein abundance in sera and cardiac tissue.
2021-12-22 | PXD030595 | Pride
Project description:Effects of climate change on animal behavior and cascading ecosystem responses are rarely evaluated. In coastal Alaska, social river otters (Lontra Canadensis), largely males, cooperatively forage on schooling fish and use latrine sites to communicate group associations and dominance. Conversely, solitary otters, mainly females, feed on intertidal-demersal fish and display mutual avoidance via scent marking. This behavioral variability creates "hotspots" of nutrient deposition and affects plant productivity and diversity on the terrestrial landscape. Because the abundance of schooling pelagic fish is predicted to decline with climate change, we developed a spatially-explicit individual-based model (IBM) of otter behavior and tested six scenarios based on potential shifts to distribution patterns of schooling fish. Emergent patterns from the IBM closely mimicked observed otter behavior and landscape use in the absence of explicit rules of intraspecific attraction or repulsion. Model results were most sensitive to rules regarding spatial memory and activity state following an encounter with a fish school. With declining availability of schooling fish, the number of social groups and the time simulated otters spent in the company of conspecifics declined. Concurrently, model results suggested an elevation of defecation rate, a 25% increase in nitrogen transport to the terrestrial landscape, and significant changes to the spatial distribution of "hotspots" with declines in schooling fish availability. However, reductions in availability of schooling fish could lead to declines in otter density over time.
| S-EPMC4489515 | biostudies-literature
Project description:The North American Beaver (Castor canadensis) is the second largest living rodent and an iconic symbol of Canada. The beaver is a semi-aquatic browser whose diet consists of lignocellulose from a variety of plants. The beaver is a hindgut fermenter and has an enlarged ceacum that houses a complex microbiome. There have been few studies examining the microbial diversity in gastrointestinal tract of hindgut fermenting herbivores. To examine the bacterial and archaeal communities inhabiting the gastrointestinal tract of the beaver, the microbiome of the ceacum and feaces was examined using culture-independent methods. DNA from the microbial community of the ceacum and feaces of 4 adult beavers was extracted, and the16S rRNA gene was sequenced using either bacterial or archaeal specific primers. A total of 1447 and 1435 unique bacterial OTUs were sequenced from the ceacum and feaces, respectively. On average, the majority of OTUs within the ceacum were classified as Bacteroidetes (49.2%) and Firmicutes (47.6%). The feaces was also dominated by OTUs from Bacteroidetes (36.8%) and Firmicutes (58.9%). The composition of bacterial community was not significantly different among animals. The composition of the ceacal and feacal microbiome differed, but this difference is due to changes in the abundance of closely related OTUs, not because of major differences in the taxonomic composition of the communities. Within these communities, known degraders of lignocellulose were identified. In contrast, to the bacterial microbiome, the archaeal community was dominated by a single species of methanogen, Methanosphaera stadtmanae. The data presented here provide the first insight into the microbial community within the hindgut of the beaver.
| S-EPMC4881982 | biostudies-literature