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Serpentine rhizosphere soil metagenome

ABSTRACT: Serpentine rhizosphere soil metagenome Raw sequence reads

PROVIDER: PRJNA1308647 | ENA |

REPOSITORIES: ENA

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Serpentine rhizosphere soil metagenome

Project description:Serpentine rhizosphere soil metagenome, BP site, replicate 2

| PRJNA1308649 | ENA

Serpentine rhizosphere soil metagenome, LL site, replicate 1

Project description:Serpentine rhizosphere soil metagenome, LL site, replicate 1 Raw sequence reads

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Serpentine rhizosphere soil metagenome, MF site, replicate 1

Project description:Serpentine rhizosphere soil metagenome, MF site, replicate 1 Raw sequence reads

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Serpentine rhizosphere soil metagenome, MF site, replicate 2

Project description:Serpentine rhizosphere soil metagenome, MF site, replicate 2 Raw sequence reads

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Serpentine rhizosphere soil metagenome, PMJ site, replicate 1

Project description:Serpentine rhizosphere soil metagenome, PMJ site, replicate 1 Raw sequence reads

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Serpentine rhizosphere soil metagenome, PMJ site, replicate 2

Project description:Serpentine rhizosphere soil metagenome, PMJ site, replicate 2 Raw sequence reads

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Serpentine rhizosphere soil metagenome, LL site, replicate 2

Project description:Serpentine rhizosphere soil metagenome, LL site, replicate 2 Raw sequence reads

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Serpentine soil microbes

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The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

Serpentine rhizosphere soil bacterial metagenome, MF site (full-length 16S)

Project description:Serpentine rhizosphere soil bacterial metagenome, MF site (full-length 16S) Raw sequence reads

| PRJNA1308674 | ENA