Litter reciprocal transplant altered soil fauna communities in bamboo invasion_PLSO
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PROVIDER: PRJNA1308994 | ENA |
REPOSITORIES: ENA
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Project description:ObjectivesSoil fauna plays a crucial role in contributing to litter breakdown, accelerating the decomposition rate and enhancing the biogeochemical cycle in terrestrial ecosystems. Comprehending the specific fauna role of functional species in litter decomposition is challenging due to their vast numbers and diversity. Climate and litter quality are widely acknowledged as dominant drives of litter decomposition across large spatial scales. However, the pattern of climate and litter quality modulates the effect of soil fauna on litter decomposition remains largely unexplored. To address this gap, we conducted an extensive analysis using data from 81 studies to investigate how climate and litter traits affects soil fauna in the decomposition.Data descriptionThe paper describes fauna body size, climate zones (tropical, subtropical and temperate), ecosystem types (forest, grassland, wetland and farmland), soil types (sand, loam and clay), decomposed duration (< 180, 180-360, > 360 days), litter initial traits, average annual temperature and precipitation. The litter traits encompass various parameters such as concentrations of carbon, nitrogen, phosphorus, potassium, lignin, cellulose, total phenol, condensed tannin, hydrolysable tannin and other nutrient traits. These comprehensive datasets provide valuable insights into the role of soil fauna on the decomposition at global scale. Furthermore, the data will give researchers keys to assess how climate, litter quality and soil fauna interact to determine decomposition rates.
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Project description:The experiment at three long-term agricultural experimental stations (namely the N, M and S sites) across northeast to southeast China was setup and operated by the Institute of Soil Science, Chinese Academy of Sciences. This experiment belongs to an integrated project (The Soil Reciprocal Transplant Experiment, SRTE) which serves as a platform for a number of studies evaluating climate and cropping effects on soil microbial diversity and its agro-ecosystem functioning. Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of soil type, soil transplant and landuse changes on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles.
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Project description:Climate and litter quality have been identified as major drivers of litter decomposition at large spatial scales. However, the role played by soil fauna remains largely unknown, despite its importance for litter fragmentation and microbial activity. We synthesised litterbag studies to quantify the effect sizes of soil fauna on litter decomposition rates at the global and biome scales, and to assess how climate, litter quality and soil fauna interact to determine such rates. Soil fauna consistently enhanced litter decomposition at both global and biome scales (average increment ~ 37%). [corrected]. However, climate and litter quality differently modulated the effects of soil fauna on decomposition rates between biomes, from climate-driven biomes to those where climate effects were mediated by changes in litter quality. Our results advocate for the inclusion of biome-specific soil fauna effects on litter decomposition as a mean to reduce the unexplained variation in large-scale decomposition models.
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Project description:Plants in their natural and agricultural environments are continuously exposed to a plethora of diverse microorganisms resulting in microbial colonization of plants in the rhizosphere. This process is believed to be accompanied by an intricate network of ongoing simultaneous interactions. In this study, we compared transcriptional patterns of Arabidopsis thaliana roots and shoots in the presence and absence of whole microbial communities extracted from compost soil. The results show a clear growth promoting effect of Arabidopsis shoots in the presence of soil microbes compared to axenically grown plants under identical conditions. Element analyses showed that iron uptake was facilitated by these mixed microbial communities which also lead to transcriptional downregulation of genes required for iron transport. In addition, soil microbial communities suppressed the expression of marker genes involved in oxidative stress/redox signalling, cell wall modification and plant defense. While most previous studies have focussed on individual plant-microbe interactions, our data suggest that multi-species transcriptional profiling, using simultaneous plant and metatranscriptomics coupled to metagenomics may be required to further increase our understanding of the intricate networks underlying plant-microbe interactions in their diverse environments.
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Project description:Soil fauna is a key control of the decomposition rate of leaf litter, yet its interactions with litter quality and the soil environment remain elusive. We conducted a litter decomposition experiment across different topographic levels within the landscape replicated in two rainforest sites providing natural gradients in soil fertility to test the hypothesis that low nutrient availability in litter and soil increases the strength of fauna control over litter decomposition. We crossed these data with a large dataset of 44 variables characterizing the biotic and abiotic microenvironment of each sampling point and found that microbe-driven carbon (C) and nitrogen (N) losses from leaf litter were 10.1 and 17.9% lower, respectively, in the nutrient-poorest site, but this among-site difference was equalized when meso- and macrofauna had access to the litterbags. Further, on average, soil fauna enhanced the rate of litter decomposition by 22.6%, and this contribution consistently increased as nutrient availability in the microenvironment declined. Our results indicate that nutrient scarcity increases the importance of soil fauna on C and N cycling in tropical rainforests. Further, soil fauna is able to equalize differences in microbial decomposition potential, thus buffering to a remarkable extent nutrient shortages at an ecosystem level.
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Project description:Litter quality and climate have been presumed to be the dominant factors regulating litter decomposition rates on broad spatial scales. However, the role of soil fauna on litter decomposition is poorly understood, despite the fact that it could strongly influence decomposition by fragmentation and subsequent modification of the activities of microorganisms.In this study, we carried out a meta-analysis on the effects of soil fauna on litter decomposition rates in Chinese forests, ranging from boreal to tropical forests, based on data from 20 studies. The effects of climatic factors on decomposition rate were assessed by comparing the contribution of soil fauna to litter decomposition from studies carried out at different latitudes.The degree of influence of the soil fauna was in the order tropical (200%) > subtropical (47%) > temperate forest (28%). Comparing the effect size of soil fauna, it was found that when soil fauna was excluded, the decomposition rate, calculated using Olson's equation, was most affected in tropical forest (-0.77), while the litter decomposition rate both subtropical (-0.36) and temperate forest (-0.19) were also suppressed to varying degrees (P < 0.001). These results highlight that soil fauna could promote litter decomposition to different extents. Using stepwise multiple linear regression, the effect size of the soil fauna was negatively correlated with the cellulose and nitrogen concentrations of the initial litter material. In Chinese forests, litter decomposition rates were reduced, on average, by 65% when soil fauna was excluded. The impact of soil fauna on decomposition was shown to be closely related to climate and litter quality.
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Project description:Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of climate warming and cooling on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles, four years after soil transplant over large transects from northern (N site) to central (NC site) and southern China (NS site) and vice versa. Four years after soil transplant, soil nitrogen components, microbial biomass, community phylogenetic and functional structures were altered. Microbial functional diversity, measured by a metagenomic tool named GeoChip, and phylogenetic diversity are increased with temperature, while microbial biomass were similar or decreased. Nevertheless, the effects of climate change was overridden by maize cropping, underscoring the need to disentangle them in research. Mantel tests and canonical correspondence analysis (CCA) demonstrated that vegetation, climatic factors (e.g., temperature and precipitation), soil nitrogen components and CO2 efflux were significantly correlated to the microbial community composition. Further investigation unveiled strong correlations between carbon cycling genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycling genes and nitrification, which provides mechanistic understanding of these microbe-mediated processes and empowers an interesting possibility of incorporating bacterial gene abundance in greenhouse gas emission modeling.
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