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Arabidopsis thaliana

ABSTRACT: Multiple tissue RNA sequencing of two Arabidopsis thaliana MAGIC founder accessions

OTHER RELATED OMICS DATASETS IN: E-GEOD-30720GSE30814

PROVIDER: PRJNA154709 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR314813.fastq.gz	Fastqsanger.gz
	SRR314814.fastq.gz	Fastqsanger.gz
	SRR314815.fastq.gz	Fastqsanger.gz
	SRR314816.fastq.gz	Fastqsanger.gz
	SRR314817.fastq.gz	Fastqsanger.gz

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Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines

Project description:We produced RNA-Seq reads from messenger RNA isolated from root tissue for the 19 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature 477:419-23 for a description of the MAGIC genetic mapping resource). The read data was generated with biological replication (two replicates). The resulting RNA-Seq data provide a resource to assess root gene expression across different accessions of A. thaliana. Comparable RNA-Seq read data for the MAGIC founder accessions for aerial seedling tissue has previously been released under GEO series GSE30720 (Gan et al. 2011. Nature, 477:419-23).

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Project description:We produced RNA-Seq reads from messenger RNA isolated from seedling, root, and floral bud tissue for 17 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data provide a resource to assess tissue-specific expression across different accessions of A. thaliana. Note that comparable read data for accessions Col-0 and Can-0, which are also founders of the MAGIC lines, has previously been released under GEO series GSE30795 (Gan et al. 2011. Nature, 477:419-23).

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Arabidopsis thaliana

Project description:Multiple tissue RNA sequencing of 17 Arabidopsis thaliana MAGIC founder accessions

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2013-12-11 | E-GEOD-53197 | biostudies-arrayexpress

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Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions

Project description:We have sequenced messenger RNA isolated from seedling tissue for 19 accessions of Arabidopsis thaliana (with biological replication). The 19 accessions for which RNA-Seq reads were collected have served as the founders for the MAGIC lines, a high-resolution recombinant inbred line mapping resource. RNA sequencing data was used to examine differential gene expression among the accessions.

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Project description:Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions

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Project description:We produced RNA-Seq reads from messenger RNA isolated from aerial seedling tissue for 9 hybrids (F1s) generated by crossing in a pairwise manner 18 of the founding accessions (inbred strains) of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource for Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data provides a resource to assess allele-specific gene expression between A. thaliana accessions.

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