Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921

ABSTRACT: Foodborne Pathogen Survey

PROVIDER: PRJNA184140 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR921435_consensus.fastq.gz	Fastqsanger.gz
	SRR926370_consensus.fastq.gz	Fastqsanger.gz
	SRR926371_consensus.fastq.gz	Fastqsanger.gz
	SRR926372_consensus.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN004345

Project description:Foodborne Pathogen Survey

| PRJNA224226 | ENA

Salmonella enterica subsp. enterica serovar Typhimurium str. CFSAN000653

Project description:Foodborne Pathogen Survey

| PRJNA191749 | ENA

Salmonella enterica subsp. enterica Serovar Typhimurium str. CFSAN002047

Project description:Foodborne Pathogen Survey

| PRJNA184135 | ENA

Salmonella enterica subsp. enterica serovar Give var. 15 str. CFSAN004343

Project description:Foodborne Pathogen Survey

| PRJNA224224 | ENA

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

Project description:Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus. Single-sample sequencing and base modification detection of cultured isolate of a foodborne pathogen.

2013-03-15 | E-GEOD-45178 | biostudies-arrayexpress

Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin.

Project description:In enteric bacteria, DNA supercoiling is highly responsive to environmental conditions. Host specific features of environment serve as cues for the expression of genes required for colonization of host niches via changing supercoiling [1]. It has been shown that substitution at position 87 of GyrA of Salmonella enterica str. SL1344 influences global supercoiling and results in an altered transcriptome with increased expression of stress response pathways [2]. Aminocoumarin antibiotics, such as novobiocin, can be used to relax supercoiling and alter the expression of supercoiling-sensitive genes. Meanwhile, Salmonella enterica demonstrates a significant resistance to this antibiotic and relatively small variability of supercoiling in response to the growth phase, osmotic pressure, and novobiocin treatment. Here we present for the first time transcriptome data of Salmonella enterica subsp. Enterica serovar Typhimurium str. 14028S grown in the presence of novobiocin. These data will help identify genes involved in novobiocin resistance and adaptation processes associated with torsion perturbations in S. enterica. Cleaned FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA, Identifier: SRP239815) and have been assigned BioProject accession PRJNA599397.

| S-EPMC7044638 | biostudies-literature

Salmonella enterica subsp. enterica serovar Muenster str. CFSAN004344

Project description:Foodborne Pathogen Survey

| PRJNA224225 | ENA

Salmonella enterica subsp. enterica serovar Anatum str. CFSAN004000

Project description:Foodborne Pathogen Survey

| PRJNA218322 | ENA

Salmonella enterica subsp. enterica serovar Anatum str. CFSAN004001

Project description:Foodborne Pathogen Survey

| PRJNA218323 | ENA

Salmonella enterica subsp. enterica serovar Anatum str. CFSAN004002

Project description:Foodborne Pathogen Survey