Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediment metagenome

ABSTRACT: Microbial communities from contaminated river sediment (the River Calcaieu, LA, USA) Metagenome

PROVIDER: PRJNA184698 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR5031300_1.fastq.gz	Fastqsanger.gz
	SRR5031300_2.fastq.gz	Fastqsanger.gz
	SRR5031310_1.fastq.gz	Fastqsanger.gz
	SRR5031310_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 127

Similar Datasets

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River.

2016-08-02 | GSE85064 | GEO

Study of microbial functional structure in Xiangjiang River sediment

2016-08-02 | E-GEOD-85064 | biostudies-arrayexpress

A transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.

Project description:We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph and two non-methanotrophic methylotrophs.

2016-12-26 | GSE85736 | GEO

Influence of seagrass decline on the metabolic profile of sediment microbial communities

Project description:Seagrass meadows are highly productive ecosystems that are considered hotspots for carbon sequestration. The decline of seagrass meadows of various species has been documented worldwide, including that of Cymodocea nodosa, a widespread seagrass in the Mediterranean Sea. To assess the influence of seagrass decline on the metabolic profile of sediment microbial communities, metaproteomes from two sites, one without vegetation and one with a declining Cymodocea nodosa meadow, were characterised at monthly intervals from July 2017 to October 2018. The differences in the metabolic profile observed between the vegetated and nonvegetated sediment before the decline were more pronounced in the deeper parts of the sediment and disappeared with the decay of the roots and rhizomes. During the decline, the protein richness and diversity of the metabolic profile of the microbial communities inhabiting the nonvegetated sediment became similar to those observed for the vegetated communities. Temporal shifts in the structure of the metabolic profile were only observed in the nonvegetated sediment and were also more pronounced in the deeper parts of the sediment. The assessment of the dynamics of proteins involved in the degradation of organic matter, such as ABC transporters, fermentation-mediating enzymes, and proteins involved in dissimilatory sulphate reduction, reflected the general dynamics of the metabolic profile. Overall, the metabolic profile of the microbial communities inhabiting the nonvegetated sediment was influenced by the decline of seagrass, with stronger shifts observed in the deeper parts of the sediment.

2025-08-04 | PXD054602 | Pride

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - T0B metagenome

| PRJNA618161 | ENA

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - T0C metagenome

| PRJNA618162 | ENA

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-3B metagenome

| PRJNA619077 | ENA

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-3C metagenome

| PRJNA619078 | ENA

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-5B metagenome

| PRJNA619080 | ENA

sediment metagenome

Project description:Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-9B metagenome

| PRJNA619096 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data