Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Host-virus transcriptome, time course, Emiliania huxleyi

PROVIDER: PRJNA184929 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR645818.fastq.gz	Fastqsanger.gz
	SRR646601.fastq.gz	Fastqsanger.gz
	SRR646603.fastq.gz	Fastqsanger.gz
	SRR646614.fastq.gz	Fastqsanger.gz
	SRR646617.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms.

2011-11-22 | GSE24341 | GEO

A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states

Project description:We performed single-cell transcriptome analysis (using MARS-seq) for the worldwide-distributed microalga Emiliania huxleyi during infection by its specific coccolithovirus. Our results provide insights into the expression programs and infection strategies of the large virus, and highlight the potential of single-cell RNA-sequencing for microbial eukaryotes in the lab and in the field.

2020-05-22 | GSE135429 | GEO

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389492 | ENA

Project description:Emiliania huxleyi BOF-92 and Emiliania huxleyi virus 99B1 Transcriptome

| PRJNA1013161 | ENA

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389499 | ENA

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389514 | ENA

Transcription profiling of Emiliania huxleyi after 6, 12 and 24 hours of viral infection infected with the virus EhV-86 in comparison to an unifected culture

Project description:Gene expression analysis of Emiliania huxleyi after 6, 12 and 24 hours of viral infection infected with the virus EhV-86 in comparison to an unifected culture.

2009-12-01 | E-MEXP-2382 | biostudies-arrayexpress

Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms.

Project description:Lytic viruses have been implicated in the massive cellular lysis observed during algal blooms, through which they assume a prominent role in oceanic carbon and nutrient flows. Despite their impact on biogeochemical cycling, the transcriptional dynamics of these important oceanic events is still poorly understood. Here, we employ an oligonucleotide microarray to monitor host (Emiliania huxleyi) and virus (coccolithovirus) transcriptomic features during the course of E. huxleyi blooms induced in seawater-based mesocosm enclosures. Host bloom development and subsequent coccolithovirus infection was associated with a major shift in transcriptional profile. In addition to the expected metabolic requirements typically associated with viral infection (amino acid and nucleotide metabolism, as well as transcription- and replication-associated functions), the results strongly suggest that the manipulation of lipid metabolism plays a fundamental role during host-virus interaction. The results herein reveal the scale, so far massively underestimated, of the transcriptional domination that occurs during coccolithovirus infection in the natural environment. Six mesocosm enclosures were placed in the Raunefjorden (Western Norway coast) and filled with natural community water (in June 2008). Nutrient enrichment was applied in order to trigger the development of E. huxleyi blooms. The major transcriptomic features of those blooms and consequent viral infections were monitered through the use of an oligo microarray containing a total of 3571 gene probes; 2271 (63.6%) matching E. huxleyi ESTs, and 1300 (36.4%) matching EhV-86 and EhV-163 genomic sequences. Each microarray contains 5 technical replicates. Sampling of total RNA present in 2L of water (from each enclosure) was performed once a day from day 8 to day 16. For enclosures 2 and 3 other sampling points were taken, covering the complete dial-cycle (6h,12h,18h, and 24h).

2011-11-22 | E-GEOD-24341 | biostudies-arrayexpress

Viral BONCAT: Detection of HPG incorporation into newly synthesized viral proteins via proteomics

Project description:BONCAT was adapted and tested as a method for directly quantifying viral production in the ocean. To confirm the successful transfer of host-associated HPG-labeled proteins or peptides into marine viruses, we conducted an independent suite of proteomic experiments with cultured systems to directly assess the production of HPG-labeled viral proteins. We used including Emiliania huxleyi strain CCMP374 and its ~200nm coccolithovirus EhV207 as well as E. coli and its ~50 nm virus T7 as virus-host model systems. These specific model systems were chosen because they represent a range of viral particle sizes and their infection dynamics are well characterized. E. huxleyi/EhV207 also represents an ecologically relevant marine virus-host pair.

2017-11-27 | PXD006580 | Pride

Emiliania huxleyi

Project description:Emiliania huxleyi transcriptome

| PRJNA397092 | ENA