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Triticum urartu

ABSTRACT: Triticum urartu Genome sequencing

PROVIDER: PRJNA188392 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR767479_1.fastq.gz	Fastqsanger.gz
	SRR767479_2.fastq.gz	Fastqsanger.gz
	SRR767480_1.fastq.gz	Fastqsanger.gz
	SRR767480_2.fastq.gz	Fastqsanger.gz
	SRR767481_1.fastq.gz	Fastqsanger.gz

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Triticum urartu strain:PI 428198 Genome sequencing and Transcriptome or Gene expression

Project description:For this project, we have sequenced, assembled and annotated a transcriptome of a diploid wheat Triticum urartu accession PI 428198. The sequencing libraries were prepared from shoot and root tissues harvested from 2-3 week old seedlings. All sequencing was carried out on the Illumina HiSeq platform using the 100 bp pair-end protocol (248.5 million reads). The assembly was constructed using a multiple k-mer approach with a de novo assembly algorithm implemented in CLC Genomics Workbench 5.5 and additional redundancy reduction with CD-HIT and blast2cap3 programs. Open reading frames and proteins were predicted using BLASTX searches and a findorf algorithm.

2013-06-11 | E-MTAB-5037 | biostudies-arrayexpress

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