Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - I

PROVIDER: PRJNA196840 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR825585.fastq.gz	Fastqsanger.gz
	SRR825586.fastq.gz	Fastqsanger.gz
	SRR825587.fastq.gz	Fastqsanger.gz
	SRR825588.fastq.gz	Fastqsanger.gz
	SRR825589.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Arabidopsis thaliana

Project description:EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II

| PRJNA224705 | ENA

Arabidopsis thaliana

Project description:EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - III

| PRJNA229430 | ENA

E-GEOD-51720

Project description:EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II

2020-04-16 | E-GEOD-51720 | ExpressionAtlas

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

Project description:EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

| PRJNA224703 | ENA

Multiplex genome-editing in Arabidopsis thaliana using Mb3Cas12a

Project description:The use of CRISPR/Cas proteins for the creation of multiplex genome-engineering represents an important avenue for crop improvement, and further improvements for creation of knock-in plant lines via CRISPR-based technologies may enable the high-throughput creation of designer alleles. To circumvent limitations of the commonly used CRISPR/Cas9 system for multiplex genome-engineering, we explored the use of Moraxella bovoculi 3 Cas12a (Mb3Cas12a) for multiplex genome-editing in Arabidopsis thaliana. We identified optimized promoter sequences for driving expression of single transcript multiplex crRNA arrays in A. thaliana, resulting in stable germline transmission of Mb3Cas12a-edited alleles at multiple target sites. By utilizing this system, we demonstrate single-transcript multiplexed genome-engineering using of up to 13 crRNA targets. We further show high target specificity of Mb3Cas12a-based genome-editing via whole-genome sequencing. Taken together, our method provides a simplified platform for efficient multiplex-genome-engineering in plant-based systems.

2021-09-15 | GSE162875 | GEO

Arabidopsis thaliana

Project description:High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

| PRJNA156713 | ENA

Arabidopsis thaliana

Project description:High-throughput sequencing of small RNAs from Arabidopsis thaliana

| PRJNA96429 | ENA

Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana siliques. m5C sites were also analyzed in an Arabidopsis T-DNA knockout for the RNA methyltransferase TRM4B.

2017-04-07 | GSE80050 | GEO

Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana roots. m5C sites were analyzed in wild type (WT) and an Arabidopsis T-DNA KO mutant for the RNA methyltransferase TRM4B.

2017-04-07 | GSE80052 | GEO

Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana seedlings. m5C sites were also analyzed in Arabidopsis trm4b-1 and trdmt1 T-DNA KO mutants for the RNA methyltransferases TRM4B and TRDMT1.

2017-04-07 | GSE80051 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data