Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Camelina sativa

ABSTRACT: Camelina sativa Transcriptome under NaCl stress condition

PROVIDER: PRJNA210881 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR935377_1.fastq.gz	Fastqsanger.gz
	SRR935377_2.fastq.gz	Fastqsanger.gz
	SRR935382_1.fastq.gz	Fastqsanger.gz
	SRR935382_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Camelina sativa

Project description:Camelina sativa Transcriptome under Cold stress condition

| PRJNA210879 | ENA

Camelina sativa

Project description:Camelina sativa Transcriptome under Drought stress condition

| PRJNA210880 | ENA

Camelina sativa

Project description:Camelina sativa Transcriptome under Cadmium stress condition

| PRJNA210882 | ENA

Camelina sativa, salinity tolerance, 1-aminocyclopropane-1-carboxylate deaminase, plant growth promoting bacteria, transgenic plants

Project description:Growth in soil inoculated with plant growth promoting bacteria (PGPB) producing 1-aminocyclopropane-1-carboxylate |(ACC) deaminase or expressing of the corresponding acdS in transgenic lines reduces the decline in shoot length, shoot weight and photosynthetic capacity triggered by salt stress in Camelina sativa. Reducing the levels of stress ethylene decreases the expression of salt stress-responsive genes, specifically genes involved in development, senescence, chlorosis and leaf abscission that are highly induced by salt to the levels that may have a less negative effect on growth and productivity. Moderate expression of acdS under the promoter of the rolD promoter or growing plants in soil treated with the PGPB Pseudomonas migulae 8R6, were more effective in eliminating the expression of the genes involved in ethylene production and/or signaling than expression under the more active Cauliflower Mosaic Virus 35S promoter.

2019-06-13 | GSE132600 | GEO

Comparative analysis of shoot and root in response to salinity stress in camelina sativa

Project description:Soil salinity presents a notable challenge to agriculture and to increasing the use marginal lands for farming. Here we provide a detailed analysis of the physiology, chemistry and gene expression patterns in roots and shoots of Camelina sativa in response to salt stress. Salt treatment reduced shoot, but not root length. Root and shoot weight were affected by salt, as was photosynthetic capacity. Salt treatment did not alter micro-element concentration in shoots, but increased macro-element (Ca and Mg) levels. Gene expression patterns in shoots indicated that salt stress may have led to shuttling of Na+ from the cytoplasm to the tonoplast and to an increase in K+ and Ca+2 import into the cytoplasm. In roots, gene expression patterns indicated that Na+ was exported from the cytoplasm by the SOS pathway and that K+ was imported in response to salt. Genes encoding proteins involved in chelation and storage were highly up-regulated in shoots, while metal detoxification appeared to involve various export mechanisms in roots. In shoots, genes involved in secondary metabolism leading to lignin, anthocyanin and wax production were up-regulated, probably to improve desiccation tolerance. Partial genome expression partitioning was observed in roots and shoots based on the expression of homeologous genes from the three C. sativa genomes. Genome I and II were involved in the response to salinity stress to about the same degree, while about 10 % more differentially-expressed genes were associated with Genome III. This study has provided valuable information and insight into the response of camelina to salt stress. Examination of this data and comparison to similar studies in more halophytic species will allow development of even more salt-tolerant varieties of this emerging industrial crop.

2017-08-10 | GSE102422 | GEO

Dissecting the molecular basis of flowering time in Camelina sativa through integration of WGCNA, eQTL analysis and transcriptome-wide association study

Project description:Camelina sativa is an important polyploid oilseed crop with multiple favorable agronomic traits. Capturing the leaf transcriptome of 48 accessions of C. sativa suggests allelic variation for gene expression levels and notably sub-genome dominance, both of which could provide opportunities for crop improvement. Flowering time (FT) is a crucial factor affecting the overall yield of crops. However, our understanding of the molecular mechanisms underlying FT regulation in C. sativa are still limited, partly due to its complex allohexaploid genome. In this study, weighted gene co-expression network analysis (WGCNA), expression quantitative trait loci (eQTL) analysis and transcriptome-wide association study (TWAS) were employed to explore the FT diversity among 48 C. sativa accessions and dissect the underlying molecular basis. Our results revealed a FT-related co-expressed gene module highly enriched with SOC1s and SOC1-like genes, and identified 10 significant FT-associated single nucleotide polymorphisms (SNPs), thus providing a molecular basis for future genetic improvements in C. sativa breeding

2025-03-25 | GSE253393 | GEO

Camelina sativa

Project description:Camelina sativa Root Transcriptome

| PRJNA210886 | ENA

Camelina sativa

Project description:Camelina sativa Flower Transcriptome

| PRJNA210887 | ENA

Camelina sativa

Project description:Camelina sativa Stem Transcriptome

| PRJNA210884 | ENA

Camelina sativa

Project description:Camelina sativa Leaf Transcriptome