Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oligella urethralis DNF00040

ABSTRACT: HMP reference genome

PROVIDER: PRJNA219661 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1518621_1.fastq.gz	Fastqsanger.gz
	SRR1518621_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

The Brief Case: Extragenitourinary Location of Oligella urethralis.

Project description: Not available

| S-EPMC6663896 | biostudies-literature

Oligella sp. HMSC05A10

Project description:HMP reference genome

| PRJNA269881 | ENA

Oligella sp. HMSC09E12

Project description:HMP reference genome

| PRJNA269916 | ENA

Oligella urethralis

Project description:Oligella urethralis overview

| PRJNA169280 | ENA

Oligella urethralis DSM 7531

Project description:Oligella urethralis DSM 7531 Genome sequencing and assembly

| PRJNA165415 | ENA

Chromosomal integration of a cephalosporinase gene from Acinetobacter baumannii into Oligella urethralis as a source of acquired resistance to beta-lactams.

Project description:Clinical Oligella urethralis isolate COH-1, which was uncommonly resistant to penicillins and narrow-spectrum cephalosporins, was recovered from a 55-year-old patient with a urinary tract infection. Shotgun cloning into Escherichia coli and expression experiments gave recombinant clones expressing either an AmpC beta-lactamase-type phenotype of resistance or a carbenicillin-hydrolyzing beta-lactamase-type phenotype of resistance. The AmpC beta-lactamase identified (ABA-1), which had a pI value of 8.2, had 98% amino acid identity with a chromosomally encoded cephalosporinase of Acinetobacter baumannii. A 820-bp insertion sequence element, ISOur1, belonging to the IS6 family of insertion sequence elements, was identified immediately upstream of bla(ABA-1), providing a -35 promoter sequence and likely giving rise to a hybrid promoter region. The carbenicillin-hydrolyzing beta-lactamase identified (CARB-8), which had a pI value of 6.4, differed from CARB-5 by two amino acid substitutions. Hybridization of CeuI fragment I-restricted DNA fragments of O. urethralis COH-1 with bla(ABA-1)-, bla(CARB-8)-, and 16S rRNA-specific probes indicated the chromosomal integration of the beta-lactamase genes. PCR and hybridization experiments failed to detect bla(CARB-8)- and bla(ABA-1)-like genes in three O. urethralis reference strains, indicating that the beta-lactamase genes identified were the source of acquired resistance in O. urethralis COH-1. This is one of the few examples of the interspecies transfer and the chromosomal integration of a gene encoding a naturally occurring beta-lactamase.

| S-EPMC153344 | biostudies-literature

Oligella urethralis strain:MSHR-50412PR

Project description:Oligella species in ear discharge from children with CSOM

| PRJNA1020600 | ENA

Complete genome sequence of <i>Oligella urethralis</i> MSHR-50412PR, isolated from an ear discharge swab of a child with chronic suppurative otitis media.

Project description:Oligella urethralis are opportunistic pathogens typically associated with genitourinary infections. Here, we report the complete genome for an Oligella urethralis isolate recovered from ear discharge of a child with chronic suppurative otitis media (strain MSHR-50412PR). The genome comprises 2.58 Mb, with 2,448 coding sequences and 46.26% average GC content.

| S-EPMC10868213 | biostudies-literature

Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988

Project description:HMP reference genome

| PRJNA170350 | ENA

Bacterium HMP2008

Project description:HMP reference genome

| PRJNA236180 | ENA