Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Caranx

ABSTRACT: Caranx Genome sequencing

PROVIDER: PRJNA220978 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1002875_1.fastq.gz	Fastqsanger.gz
	SRR1002875_2.fastq.gz	Fastqsanger.gz
	SRR1002876_1.fastq.gz	Fastqsanger.gz
	SRR1002876_2.fastq.gz	Fastqsanger.gz
	SRR1002927_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Caranx melampygus

Project description:Caranx melampygus overview

| PRJNA738976 | ENA

Caranx ignobilis

Project description:Caranx ignobilis overview

| PRJNA757484 | ENA

Caranx melampygus isolate:HI-2018

Project description:Caranx melampygus isolate:HI-2018 Genome sequencing and assembly

| PRJNA670455 | ENA

Caranx ignobilis isolate:HI-2019

Project description:Caranx ignobilis isolate:HI-2019 Genome sequencing and assembly

| PRJNA670456 | ENA

Project description:Caranx ignobilis and Caranx melampygus ddRADseq library

| PRJNA716671 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

E-GEOD-18068

Project description:Genome-wide transcriptome sequencing at different stages of Drosophila melanogaster development, RNA-seq

2020-07-22 | E-GEOD-18068 | ExpressionAtlas

The genome of a giant (trevally): <i>Caranx ignobilis</i>.

Project description:Caranx ignobilis, commonly known as giant kingfish or giant trevally, is a large, reef-associated apex predator. It is a prized sportfish, targeted throughout its tropical and subtropical range in the Indian and Pacific Oceans. It also gained significant interest in aquaculture due to its unusual freshwater tolerance. Here, we present a draft assembly of the estimated 625.92 Mbp nuclear genome of a C. ignobilis individual from Hawaiian waters, which host a genetically distinct population. Our 97.4% BUSCO-complete assembly has a contig NG50 of 7.3 Mbp and a scaffold NG50 of 46.3 Mbp. Twenty-five of the 203 scaffolds contain 90% of the genome. We also present noisy, long-read DNA, Hi-C, and RNA-seq datasets, the latter containing eight distinct tissues and can help with annotations and studies of freshwater tolerance. Our genome assembly and its supporting data are valuable tools for ecological and comparative genomics studies of kingfishes and other carangoid fishes.

| S-EPMC9694125 | biostudies-literature

E-GEOD-58326

Project description:Transcription profiling by high throughput sequencing of ZNF217 chromatin occupancy in the breast cancer cell genome

2025-01-24 | E-GEOD-58326 | ExpressionAtlas

Project description:Complete mitochondrion of Caranx crysos

| PRJNA706539 | ENA