Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crassostrea hongkongensis

ABSTRACT: Transcriptome response to salinity stress in Crassostrea hongkongensis

PROVIDER: PRJNA223230 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1013750_1.fastq.gz	Fastqsanger.gz
	SRR1013750_2.fastq.gz	Fastqsanger.gz
	SRR1013751_1.fastq.gz	Fastqsanger.gz
	SRR1013751_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptome response to salinity stress in Crassostrea hongkongensis

Project description:Low salinity is one of the main factors limiting the distribution and survival of marine species. As estuarine species, Crassostrea hongkongensis can live in relative low salinity. Through Illumina sequencing, we generated two transcriptomes with samples taken from gills of oysters exposed to the low salinity seawater versus the optimal seawater. By RNAseq technology, we found 13550 up-regulation genes and 9914 down-regulation genes that may regulate osmotic stress in C. hongkongensis. As blasted by GO annotation and KEGG pathway mapping, functional annotation of the genes recovered diverse biological functions and processes. The genes regulated significantly were dominated in structural molecule activity, intracellular,cytoplasm protein metabolism, biosynthesis,cell and transcription regulator activity according to GO annotation. The study aimed to compare the expression data of the two transcriptomes to provide some useful insights into signal transduction pathways in oysters and offer a number of candidate genes as potential markers of tolerance to hypoosmotic stress for oysters. In addition, the characterization of C. hongkongensis transcriptome will facilitate research into biological processes underlying physiological adaptations to hypoosmotic shock for marine invertebrates.

2014-10-01 | GSE51157 | GEO

Transcriptome response to salinity stress in Crassostrea hongkongensis

2014-10-01 | E-GEOD-51157 | biostudies-arrayexpress

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis overview

| PRJNA82207 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis Proteome

| PRJNA81945 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis Transcriptome or Gene expression

| PRJNA214305 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis Raw sequence reads

| PRJNA488328 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis Raw sequence reads

| PRJNA1181942 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis Raw sequence reads

| PRJNA551720 | ENA

Crassostrea hongkongensis

Project description:Crassostrea hongkongensis genome raw sequencing reads

| PRJNA592306 | ENA

The Sperm Proteome of the Oyster Crassostrea hongkongensis

Project description:Here we reported 226 sperm proteins from the Hong Kong oyster Crassostrea hongkongensis. Proteins extracted from three sperm samples were separated by SDS-PAGE, analyzed by LC-MS/MS and identified using Mascot.

2020-09-04 | PXD018255 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data