Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gallus gallus strain:White leghorn

ABSTRACT: The Transcriptomes of Natural Developmental Magnum in Chickens

PROVIDER: PRJNA229361 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1185950_1.fastq.gz	Fastqsanger.gz
	SRR1185950_2.fastq.gz	Fastqsanger.gz
	SRR1182481_1.fastq.gz	Fastqsanger.gz
	SRR1182481_2.fastq.gz	Fastqsanger.gz
	SRR1636051_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Gallus gallus breed:White Leghorn

Project description:Gallus gallus Raw sequence reads - Trigeminal Ganglion Developmental Timecourse

| PRJNA1189033 | ENA

Gallus gallus white isthmus transcriptome

Project description:The Del-Mar 14K chip was used to interrogate differential expression of transcripts in the white isthmus (WI) compared with the adjacent magnum (Mg) and uterine (Ut) segments of the hen oviduct. Differential expression of genes common to both comparisons (WI/Mg and WI/Ut) was detected for 204 annotated proteins. Of these, 58 genes were overexpressed in both WI/Mg and WI/Ut, and are therefore considered to be the most interesting candidates for WI - specific functions. Additionally, general analysis revealed 135 clones hybridizing to overexpressed transcripts (WI/Mg + WI/Ut), and corresponding to 102 NCBI annotatated non-redundant Gallus gallus gene ID~s. This combined analysis revealed that structural proteins highly over-expressed in white isthmus were collagen X (COL10A1), Fibrillin (FBN1) and Cysteine Rich Eggshell Membrane Protein (CREMP). In addition, genes encoding collagen-processing enzymes were over-expressed, as were proteins known to regulate disulfide cross-linking, suggesting that coordinated upregulation of gene networks in the white isthmus is associated with eggshell membrane fibre formation. IPA interactome analysis reinforces the key role of the estrogen receptor and SMAD3 in mediating gene regulation during eggshell membrane synthesis. These results will assist with development of selection strategies to improve eggshell quality and food safety of the table egg. Keywords: Laying hen, eggshell, oviduct, Isthmus expression, cDNA microarray, indirect cDNA labelling, Alexa Fluor dyes Keywords: Expression profiling by array A balanced block hybridization design (Dye switch) was used where half of the samples were labelled with AlexaM-BM-. 555 fluorescent dye and the other half with AlexaM-BM-. 647. A total of 16 microarray slides were used for hybridization to 32 samples that correspond to four tissue contrast (White isthmus versus magnum and uterus versus white isthmus).

2013-12-01 | E-GEOD-52491 | biostudies-arrayexpress

Gallus gallus white isthmus transcriptome

2013-12-01 | GSE52491 | GEO

Transcription profiling of chicken strain (white leghorn and red junglefowl) hypothalamus and thalamus

Project description:Examination of differential gene expression the hypothalamus and thalamus of White Leghorn and red junglefowl chickens.

2006-02-10 | E-MEXP-458 | biostudies-arrayexpress

Gallus gallus strain:white leghorn

Project description:Genetic changes caused by acute kidney injury in chicken kidneys

| PRJDB12152 | ENA

Gallus gallus strain:white leghorn

Project description:DT40 cell line transcriptome

| PRJNA203279 | ENA

Gallus gallus strain:white leghorn

Project description:Gallus gallus Oviduct Transcriptome

| PRJNA173328 | ENA

Responses to DNA vaccine against H5 virus in White Leghorn SPF chickens.

Project description:White Leghorn SPF chickens were immunized with two doses of DNA vaccine, based on the hemagglutinin (HA) DNA from H5N1 virus, in comparison to the control group, which was administered an empty vector (pCI). Gene expression changes in the spleens of chickens were investigated at 7 day post booster dose.

2020-02-29 | GSE135669 | GEO

Gallus gallus breed:White Leghorn

Project description:Gallus gallus breed:White Leghorn Transcriptome or Gene expression

| PRJNA276962 | ENA

Gallus gallus breed:White leghorn

Project description:Olfactory epithelium and pectoralis transcriptome form three bird species.

| PRJNA1359769 | ENA