Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bioreactor metagenome

ABSTRACT: bioreactor enrichments from intertidal sediment - Metagenomes and Metatranscriptomes

PROVIDER: PRJNA231836 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1068234.fastq.gz	Fastqsanger.gz
	SRR1068235.fastq.gz	Fastqsanger.gz
	SRR1068236.fastq.gz	Fastqsanger.gz
	SRR1068237.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

bioreactor metagenome

Project description:Bioreactor enrichments from intertidal sediment Metagenome

| PRJNA246767 | ENA

bioreactor metagenome

Project description:Continuous culture enrichments from intertidal sediment - Metagenomes, Metatranscriptomes and 16S tag sequencing

| PRJNA255238 | ENA

bioreactor metagenome

Project description:Bioreactor inoculated with intertidal sediment - Metagenome

| PRJNA226580 | ENA

Differential gene expression of dechlorinating communities with Dehalococcoides mccartyi species

Project description:The aim of this study is to obtain a systems level understanding of the interactions between Dehalococcoides and corrinoid-supplying microorganisms by analyzing community structures and functional compositions, activities and dynamics in trichloroethene (TCE)-dechlorinating enrichments. Metagenomes and metatranscriptomes of the dechlorinating enrichments with and without exogenous cobalamin were compared. Seven draft genomes were binned from the metagenomes. At an early stage (2 d), more transcripts of genes in the Veillonellaceae bin-genome were detected in the metatranscriptome of the enrichment with exogenous cobalamin compared to the one without cobalamin addition. Among these genes, sporulation-related genes exhibited the highest differential expression when cobalamin was not added, suggesting a possible release route of corrinoids from corrinoid-producers. Other differentially expressed genes include those involved in energy conservation and nutrient transport (including cobalt transport). The most highly expressed corrinoid de novo biosynthesis pathway was also assigned to the Veillonellaceae bin-genome. Targeted qPCR analyses confirmed higher transcript abundances of those corrinoid biosynthesis genes in the enrichment without exogenous cobalamin. Furthermore, Dehalococcoides' corrinoid salvaging and modification pathway was upregulated in response to the cobalamin stress. This study provides important insights into the microbial interactions and roles of members of dechlorinating communities under cobalamin-limited conditions.

2017-01-28 | GSE94143 | GEO

deep marine sediment metagenome

Project description:deep marine sediment metagenomes and metatranscriptomes

| PRJNA739005 | ENA

bioreactor metagenome

Project description:Bioreactor inoculated with sediment Metagenome

| PRJNA158439 | ENA

Metaproteomes of a cyanobacterial consortium from a haloalkaline bioreactor over a 12 day dark incubation

Project description:A photosynthetic cyanobacterial/microbial consortium was incubated in the dark for 12 days. During the course of this dark incubation, samples were taken every two days from the biomass portion and the liquid (supernatant) portion of the bioreactor. Metaproteomics analysis was conducted on these time series samples and binned and assembled metagenomes from the same samples were used as the database for protein identification.

2023-11-01 | PXD023504 | Pride

Project description:Mudflat intertidal sediment metagenomes in Qingdao

| PRJNA1099403 | ENA

bioreactor metagenome

Project description:Alkaline sediment microbial communities from bioreactor in Germany - TP_S3

| PRJNA289377 | ENA

wastewater metagenome

Project description:Metagenomes and metatranscriptomes from polychlorinated biphenyl (PCB)-contaminated sediment microcosms

| PRJNA743546 | ENA