Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bos taurus

ABSTRACT: MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

PROVIDER: PRJNA238624 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1171730.fastq.gz	Fastqsanger.gz
	SRR1171731.fastq.gz	Fastqsanger.gz
	SRR1171732.fastq.gz	Fastqsanger.gz
	SRR1171733.fastq.gz	Fastqsanger.gz
	SRR1171734.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

RNA-seq of Staphylococcus aureus human and bovine strains cultured in TSB and 50% milk media

Project description:The aim of this experiment was to understand the different transcriptomic profiles of Staphylococcus aureus strains when cultured in 50% milk media with TSB media as a control. Bovine S. aureus strains that are capable of clotting milk where compared to both bovine and human S. aureus strains unable to clot milk. All strains are from sequence type 97.

2024-09-04 | E-MTAB-14384 | biostudies-arrayexpress

Transcription profiling of Bos taurus mammary gland infected with E. coli or S. aureus to investigate response to pathogen invasion and identify general and pathogen-specific transcriptional profiles

Project description:Investigation of the bovine mammary gland response to Escherichia coli and Staphylococcus aureus infection. The aims of the study were to examine the dynamics of the mammary gland response to pathogen invasion and identify general and pathogen-specific transcriptional profiles. Individual udder quarters of 12 cows were sequentially inoculated with either E. coli or S. aureus over 24 or 72 hours before culling, whilst one quarter was used as an uninfected control.

2011-05-01 | E-TABM-704 | biostudies-arrayexpress

MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

Project description:Milk is an essential source of nutrients to all mammalian offspring, and is rich in a wide variety of immunological components. Recently reported miRNAs that are present in breast milk and are selectively packaged into the exosomes, a type of membrane vesicles, secreted by most cell types. These exosomal miRNAs could be actively delivered into recipient cells, and play a key role in the regulation of innate and adaptive immunity. In the present study we analyzed the lactation-related miRNA expression profiles in bovine milk exosomes at 2 days post-infection with Staphylococcus aureus (S. aureus) using a deep sequencing. Analyzing over 76.44 million sequencing reads, a total of 720 miRNAs including 303 high-confident miRNA candidates were identified by two different approaches. The top 10 highly expressed miRNAs accounted for approximately 80% of all aligned reads, with the remaining miRNAs showing much lower expression. Bta-miR-101, -142-5p, -183, -2285g-3p, -223 and -99a-5p were significantly differentially regulated in S. aureus infected milk compared to their uninfected controls. Target prediction of the differently expressed miRNAs revealed 219 potential target candidates, and 22 unique target genes identified by David Gene Ontology analysis were significantly related to host immune processes and inflammation. This new knowledge of milk miRNA expression in response to S. aureus infection significantly provides new and comprehensive information on milk miRNA composition in general as well as changes occurring during an infection.

2016-10-31 | GSE55144 | GEO

Bos taurus

Project description:Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles

| PRJNA225962 | ENA

Bos taurus

Project description:Response of bovine mammary tissue to experimental Staphylococcus aureus infection experiment 2.

| PRJNA105089 | ENA

Bos taurus

Project description:Response of bovine mammary tissue to experimental Staphylococcus aureus infection experiment 3.

| PRJNA105091 | ENA

Bos taurus

Project description:Response of bovine mammary tissue to experimental Staphylococcus aureus infection experiment 1.

| PRJNA105199 | ENA

Bos taurus

Project description:Expression profiles of microRNA in bovine raw milk exosome and supernatant without exosome [miRNA array]

| PRJNA262856 | ENA

Bos taurus

Project description:Expression profiles of microRNA in bovine raw milk exosome and supernatant without exosome [mRNA array]

| PRJNA262857 | ENA

Bos taurus

Project description:Circulating microRNA profiles during the bovine oestrous cycle

| PRJNA320377 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data