Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vernicia fordii

ABSTRACT: Vernicia fordii overview

PROVIDER: PRJNA241464 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1231452.fastq.gz	Fastqsanger.gz
	SRR5515193_1.fastq.gz	Fastqsanger.gz
	SRR5515193_2.fastq.gz	Fastqsanger.gz
	SRR5515194_1.fastq.gz	Fastqsanger.gz
	SRR5515194_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Vernicia fordii

Project description:Vernicia fordii transcriptome

| PRJNA306593 | ENA

Vernicia fordii

Project description:Vernicia fordii Raw sequence reads

| PRJNA481656 | ENA

Vernicia fordii strain:Duiniantong

Project description:Vernicia fordii Random survey

| PRJNA240660 | ENA

Vernicia fordii

Project description:Flower development and sex determination in Vernicia fordii

| PRJNA385776 | ENA

Vernicia fordii strain:Duiniantong

Project description:Vernicia fordii strain:Duiniantong Random survey

| PRJNA240655 | ENA

Vernicia fordii strain:Duiniantong

Project description:Vernicia fordii strain:Duiniantong Random survey

| PRJNA240657 | ENA

Vernicia fordii strain:Duiniantong

Project description:Vernicia fordii strain:Duiniantong Random survey

| PRJNA242691 | ENA

Vernicia fordii strain:Duiniantong

Project description:Vernicia fordii strain:Duiniantong Random survey

| PRJNA242690 | ENA

Identification of microRNAs and their targets in Vernicia fordii seeds by high-throughput sequencing

Project description:The tung (Vernicia fordii) oil is a valuable industrial oil and has been considered to the production of biodiesel. Because of the poor agronomic traits of this crop, efforts have been made to transfer genes related to the production of its oil to higher yielding plants. However, the mechanisms highlighting gene expression in this plant is poorly understood. MicroRNAs are endogenously encoded small RNAs that play a key role in diverse plant biological processes. In order to identify and characterize miRNAs and their targets in V. fordii we generated by deep sequencing a sRNA and a mRNA library from mature seeds. Using sequence homology we identified 138 conserved plant miRNAs, which were distributed in 34 conserved miRNAs families. Further computation analysis allowed the prediction of secondary structures for 18 conserved and 14 novel miRNAs, as well as several miRNA variants (isomiRNAs). The predicted miRNA target genes are involved in a broad range of physiological functions, including growth and development, stress resistance and also lipid metabolism. This study presents the first identification of V. fordii miRNAs and contributes to understand the function of these miRNAs.

2016-09-12 | GSE50810 | GEO

Vernicia fordii cultivar:Putaotong

Project description:Vernicia fordii cultivar:Putaotong Raw sequence reads

| PRJNA445068 | ENA