Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chlamydomonas acidophila strain:RT46

ABSTRACT: Identification of genes involved in heavy metal tolerance and transcriptomic changes caused by copper excess in the extremophilic green alga Chlamydomonas acidophila

PROVIDER: PRJNA242235 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1199260.fastq.gz	Fastqsanger.gz
	SRR1199261.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Chlamydomonas acidophila

Project description:Chlamydomonas acidophila overview

| PRJNA445076 | ENA

Acidothrix acidophila

Project description:Acidothrix acidophila overview

| PRJNA403896 | ENA

Neohortaea acidophila

Project description:Hortaea acidophila overview

| PRJNA373766 | ENA

Project description:Analysis of transcriptomic change of heavy metal exposed green alga Ulva pertusa

| PRJNA604909 | ENA

Expression data from C. elegans in the presence or absence of copper sulfate

Project description:MAP kinases are integral to the mechanisms by which cells respond to a wide variety of environmental stresses. In Caenorhabditis elegans, the KGB-1 JNK signaling pathway regulates the response to heavy metal stress. The deletion mutants of this cascade show hypersensitivity to heavy metals like copper or cadmium. However, factors that function downstream of KGB-1 pathway are not well characterized. To understand how the KGB-1 pathway modulates gene activity and to define the physiological processes in which the heavy metal stress response may be involved, we used microarray to examine gene expression changes in wild-type and kgb-1 mutant animals subjected to heavy metal stress. Adult worms of WT or kgb-1 mutant were incubated with H2O or 1 mM copper sulfate for 1 hour. Total RNA was then prepared using Trizol reagent (Invitrogen), followed by DNase I treatment, phenol/chloroform extraction and ethanol precipitation. (WT_Cu-), (WT_Cu+), (kgb-1_Cu-) and (kgb-1_Cu+) RNAs extraction were hybridized on Affymetrix microarrays.

2012-12-05 | E-GEOD-42703 | biostudies-arrayexpress

Expression data from C. elegans in the presence or absence of copper sulfate

2012-12-05 | GSE42703 | GEO

Transcriptomics study of excess Mn (1000 uM) in Chlamydomonas reinhardtii

Project description:Liquid cultures of the unicellular green alga, Chlamydomonas reinhardtii were grown in media with 6 uM Mn (control) or 1000 uM Mn (experimental), and analyzed by RNA-Seq to identify genes that are differentially expressed in response to excess Mn.

2022-03-25 | GSE169756 | GEO

Transcription profiling of fission yeast in response to changes in copper and iron levels

Project description:Recent studies in comparative genomics demonstrate that inter-species comparisons represent a powerful tool for revealing both conserved and specialized biological processes across large evolutionary distances. All cells need to adjust to environmental fluctuations in metal levels since both metal excess and deficit are detrimental. Here, we explore the conservation of metal homoeostasis in two distantly related yeasts, examining genome-wide gene expression responses to changing copper and iron levels in budding and fission yeast using DNA microarrays

2007-03-01 | E-TABM-120 | biostudies-arrayexpress

Gene Expression in Dunaliella salina Bardawil +/- Iron

Project description:Dunaliella salina Bardawil (also known as Dunaliella bardawil) is an extremophilic, unicellular green alga from the Chlorophyte lineage. D. salina is found in hypersaline environments where it can tolerate extremes of heat, light, pH, and up to saturating concentrations of salt. The D. salina Bardawil isolate (UTEX LB 2538) was found in a salt pond near the Bardawil Lagoon on the Sinai peninsula in 1976. This isolate of D. salina is the richest natural source of beta-carotene, a highly valuable commercial product. This accession includes an RNA-Seq analysis of D. salina Bardawil cultures grown in iron-replete (1.5 µM) or iron-deficient (0 µM) media.

2023-06-30 | GSE222140 | GEO

Gene Expression in Dunaliella tertiolecta +/- Iron

Project description:Dunaliella tertiolecta is an extremophilic, green alga from the Chlorophyte lineage. It is found in coastal marine environments around the world. D. tertiolecta can tolerate extremes of heat, light, pH, and salinity. D. tertiolecta is under development for the production biofuels and other bioproducts because it can produce large quantities of neutral lipids, and it can be grown in open raceway ponds using only the inputs of seawater and sunlight. This isolate of D. tertiolecta (UTEX LB 999) was found in Oslofjord, Norway in 1938. This accession includes an RNA-Seq analysis of D. tertiolecta cultures grown in iron-replete (1.5 µM) or iron-deficient (0 µM) media.

2023-06-30 | GSE222141 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data