Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella algae

ABSTRACT: Shewanella haliotis overview

PROVIDER: PRJNA247428 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DRR003247.fastq.gz	Fastqsanger.gz
	DRR015760_1.fastq.gz	Fastqsanger.gz
	DRR015760_2.fastq.gz	Fastqsanger.gz
	DRR015761_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 35

Similar Datasets

Shewanella algae

Project description:Whole genome sequencing of Shewanella haliotis, an opportunistic pathogen

| PRJDB1944 | ENA

Shewanella algae

Project description:Whole genome sequencing of Shewanella haliotis, an opportunistic pathogen

| PRJDB2810 | ENA

Shewanella algae

Project description:Shewanella algae overview

| PRJNA172819 | ENA

Shewanella algae JCM 14758

Project description:Genome sequencing of Shewanella haliotis JCM 14758

| PRJDB630 | ENA

Shewanella algae

Project description:Shewanella algae Genome sequencing

| PRJNA240136 | ENA

Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae

Project description:Shewanella spp. possess a broad respiratory versatility, which contributes to the occupation of hypoxic/anoxic environmental or host-associated niches. Here we observed a strain-specific induction of biofilm formation in response to supplementation with the anaerobic electron acceptors dimethyl sulfoxide (DMSO) and nitrate in a panel of Shewanella algae isolates. The respiration-driven biofilm response is not observed in DMSO and nitrate reductase deletion mutants of the type strain S. algae CECT 5071, and can be restored upon complementation with the corresponding reductase operon(s) but not by an operon containing a catalytically inactive nitrate reductase. The distinct transcriptional changes, proportional to the effect of these compounds on biofilm formation, include cyclic di-GMP (c-di-GMP) turnover genes. In support, ectopic expression of the c-di-GMP phosphodiesterase YhjH of Salmonella Typhimurium but not its catalytically inactive variant decreased biofilm formation. The respiration-dependent biofilm response of S. algae may permit differential colonization of environmental or host niches.

2020-12-05 | GSE133627 | GEO

Shewanella algae

Project description:Shewanella algae Genome sequencing and assembly

| PRJNA1330513 | ENA

Shewanella algae

Project description:Shewanella algae Genome sequencing and assembly

| PRJNA725326 | ENA

Shewanella algae

Project description:Whole genome sequencing of Shewanella algae, an opportunistic pathogen

| PRJDB2419 | ENA

Shewanella algae strain:BrY

Project description:Shewanella algae genome sequencing