Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chlorodrepanis virens strain:Hawaii Amakihi

ABSTRACT: Hawaiian Honeycreeper Genome Sequencing

PROVIDER: PRJNA252695 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1718440_1.fastq.gz	Fastqsanger.gz
	SRR1718440_2.fastq.gz	Fastqsanger.gz
	SRR1715761_1.fastq.gz	Fastqsanger.gz
	SRR1715761_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Hawaii amakihi (Chlorodrepanis virens) Plasmodium relictum strain GRW$

Project description:Transcriptome sequencing of Hawaii amakihi and Plasmodium relictum GRW4

| PRJNA690103 | ENA

Chlorodrepanis virens

Project description:Chlorodrepanis virens overview

| PRJNA924873 | ENA

Chlorodrepanis virens

Project description:Chlorodrepanis virens

| PRJNA920864 | ENA

Project description:Hawaiian honeycreeper gut microbiome

| PRJNA742066 | ENA

Hawaiian honeycreepers (Drepanidini)

Project description:Phylogenomics of the Hawaiian Honeycreeper Radiation

| PRJNA944998 | ENA

Project description:Gene expression in two Hawaiian honeycreeper populations

| PRJNA1248578 | ENA

Genome-wide mapping of H3K4 tri-methylation in ΔUvkmt2 mutant strain of Ustilaginoidea virens

Project description:Epigenetic modification is important for cellular functions. Trimethylation of histone H3 lysine 4 (H3K4me3), which associates with transcriptional activation, is one of the important epigenetic modifications. In this study, the biological functions of UvKmt2-mediated H3K4me3 modification were characterized in Ustilaginoidea virens, which is the causal agent of the false smut disease, one of the most destructive diseases in rice. Phenotypic analyses of the ΔUvkmt2 mutant revealed that UvKMT2 is necessary for growth, conidiation, secondary spore formation, and virulence in U. virens. Immunoblotting and chromatin immunoprecipitation assay followed by sequencing (ChIP-seq) showed that UvKMT2 is required for the establishment of H3K4me3, which covers 1729 genes of the genome in U. virens. In particular, H3K4me3 modification involves in the transcriptional regulation of conidiation-related and pathogenic genes. The down-regulation of UvHOG1 and UvPMK1 genes may be one of the main reasons for the reduced pathogenicity and stresses adaptability of the ∆Uvkmt2 mutant. Overall, H3K4me3, established by histone methyltransferase UvKMT2, contributes to fungal development, secondary spore formation, virulence, and various stresses response through transcriptional regulation in U. virens.

2022-05-25 | GSE203326 | GEO

Hawaiian picture wing Drosophila sproati exhibit adaptive population divergence along a narrow climatic gradient on Hawaii Island

Project description:D. grimshawi microarray used to text for gene expression differences between two populations subjected to control or low-intensity heat for one week during maturation Anthropogenic influences on global processes and climatic conditions are increasingly affecting ecosystems throughout the world. Hawaii Island’s native ecosystems are well-studied and local long-term climatic trends well-documented, making these ecosystems ideal for evaluating how native taxa may respond to a warming environment. This study documents adaptive divergence of populations of a Hawaiian picture wing Drosophila, D. sproati, that are separated by only 7km and 365m in elevation. Representative laboratory populations show divergent behavioral and physiological responses to an experimental low-intensity increase in ambient temperature during maturation. The significant interaction of source population by temperature treatment for behavioral and physiological measurements indicates differential adaptation to temperature for the two populations. Significant differences in gene expression among males were mostly explained by the source population, with eleven genes in males also showing a significant interaction of source population by temperature treatment. The combined behavior, physiology, and gene expression differences between populations illustrates the potential for local adaptation to occur over a fine spatial scale and exemplifies nuanced response to climate change.

2018-11-27 | GSE122959 | GEO

Ustilaginoidea virens

Project description:Ustilaginoidea virens Genome sequencing

| PRJNA606646 | ENA

Fragaria vesca strain:Hawaii 4

Project description:Fragaria vesca strain:Hawaii 4 Genome sequencing

| PRJNA343806 | ENA