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Zymoseptoria tritici

ABSTRACT: Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

PROVIDER: PRJNA253135 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1427070.fastq.gz	Fastqsanger.gz
	SRR1427080.fastq.gz	Fastqsanger.gz
	SRR1427071.fastq.gz	Fastqsanger.gz
	SRR1427072.fastq.gz	Fastqsanger.gz
	SRR1427073.fastq.gz	Fastqsanger.gz

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Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

Project description:Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it developed resistance to most fungicides due to target site modifications. Recently isolated strains showed cross-resistance to diverse fungicides and to unrelated drugs, suggesting a resistance mechanism that seems rarer in phytopathogenic fungi, known as multidrug resistance (MDR) in other organisms. In this study we show for two Z. tritici MDR strains, MDR6 and MDR7, enhanced prochloraz efflux sensitive to the modulators amitryptiline and chlorpromazine. Efflux was also inhibited by verapamil in the MDR7strain. Transcriptomics revealed several overexpressed transporter genes in both MDR strains, out of which the expression of the MgMFS1 transporter gene was the strongest and constitutively high in tested MDR field strains. Its inactivation in the MDR6 strain abolished resistance to fungicides with different modes of action revealing its involvement in the MDR phenomenon in Z. tritici.

2015-06-10 | GSE58672 | GEO

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

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Responses to temperature shocks in Zymoseptoria tritici reveal specific transcriptional reprogramming and novel candidate genes for thermal adaptation

Project description:The transcriptomic response of Zymoseptoria tritici IPO323 spores under heat and cold shock.

2024-12-22 | GSE284056 | GEO

Deciphering defense mechanisms primed by a rhamnolipid in wheat towards Zymoseptoria tritici

Project description:We revealed that a rhamnolipid protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with different functional groups of genes.

2022-06-22 | GSE178704 | GEO

Wheat resistance response triggered upon recognition of the avirulence factor AvrStb6 hinders the penetration of Zymoseptoria tritici through stomata

Project description:Wheat (Chisenese Spring) and Zymoseptoria tritici AvrStb6-expressing virulent and avirulent strains transcriptomes analyses

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On-target antifungal activity and induction of an unusual metabolic defense mechanism by inhibitors of wheat pathogen Zymoseptoria tritici N-myristoyltransferase

Project description:Novel myristoylated proteins in a fungal pathogen of wheat Zymoseptoria tritici were identified.

2020-06-22 | PXD012857 | Pride

Deciphering immune responses primed by a bacterial lipopeptide in wheat towards Zymoseptoria tritici

Project description:We revealed that mycosubtilin, a lipopeptide from Bacillus subtilis, protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with sixteen functional groups, including responses to pathogens, abiotic and oxidative stresses, secondary metabolism, cell-wall structure and function, and primary metabolic pathways (carbohydrate, amino acid, protein, lipid, and energy metabolisms).

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Transcriptome sequencing at early stage infection of the wheat pathogen Zymoseptoria tritici reveals chromosomal differences in transcription patterns and host specific gene expression.

Project description:We have applied whole transcriptome profiling to infer genetic determinants of pathogenicity and host specialization in Z. tritici. Our data includes RNAseq data from early infection stages of a compatible (wheat) and a non-compatible host (Brachypodium distachyon). Overall transcription of AC genes is remarkably lower than genes on core chromosomes (CC) and only 40% of the genes are transcribed. We identify 31 AC and 1069 CC genes showing plant specific expression. In addition 21 CC genes are only upregulated in wheat supporting functional relevance in host specificity. We further explore the genomic composition and distribution of unique and paralogous genes in Z. tritici focusing on the evolutionary origin of AC genes. In contrast to previous studies we show that ACs mainly encode unique genes. Phylogenetic analyses suggest that rare duplication events in the Z. tritici genome precede diversification of Zymoseptoria species and demonstrate that ACs have been maintained in the genome of Zymoseptoria over long evolutionary times. Examination of gene expression at 3 different growth condition of the wheat pathogen Z. tritici.

2014-06-30 | E-GEOD-54874 | biostudies-arrayexpress

Transcriptome sequencing at early stage infection of the wheat pathogen Zymoseptoria tritici reveals chromosomal differences in transcription patterns and host specific gene expression.

2014-06-30 | GSE54874 | GEO