Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Genome-wide Oct4 binding profile in lung cancer A549 cells

PROVIDER: PRJNA253167 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1427220.fastq.gz	Fastqsanger.gz
	SRR1427230.fastq.gz	Fastqsanger.gz
	SRR1427221.fastq.gz	Fastqsanger.gz
	SRR1427231.fastq.gz	Fastqsanger.gz
	SRR1427222.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Genome-wide Oct4 binding profile in lung cancer A549 cells

Project description:Oct4 stemness gene encoding a transcription factor has been shown to overexpress in cancers. However, precise mechanisms of Oct4 relevant to transcriptional reprogramming leading to somatic cancer progression remain unclear. To address the Oct4-mediated transcriptional program in lung cancer, we integrated genome-wide Oct4 binding profiles from chromatin-immunoprecipitation sequencing and ENCODE datasets. We identified that Oct4 occupied at functional promoter and enhancer regions of genes which play key roles in several signaling pathways involving tumorigenesis. Genome-wide Oct4 binding sites were identified via chromatin immunoprecipitation-sequencing analysis of vecoter control and stably Oct4-overexpressing A549 lung cancer cells. ChIP-seq analyses were performed in duplicated samples using Applied Biosystems SOLiD system.

2015-02-04 | E-GEOD-58462 | biostudies-arrayexpress

Homo sapiens

Project description:miRNA expression of lung cancer cells A549 and cisplatin (DDP) resistant lung cancer cells A549/DDP

| PRJNA338942 | ENA

Homo sapiens

Project description:Resveratrol action on A549 lung cancer cells

| PRJNA102491 | ENA

Homo sapiens

Project description:Transcriptome profile after knockdown of a lncRNA EPEL in A549 lung cancer cells

| PRJNA397549 | ENA

Homo sapiens

Project description:miRNA expression of exosomes derived from lung cancer cells A549 and cisplatin (DDP) resistant lung cancer cells A549/DDP

| PRJNA338941 | ENA

Homo sapiens

Project description:Genome-wide maps of SOX2 binding sites in lung cancer cells

| PRJNA382356 | ENA

Homo sapiens

Project description:Genomic binding sites of non-metastatic 2 (NME2) across promoters in lung cancer A549 cells

| PRJNA123513 | ENA

Characterization of the transcriptional roles of NME2

Project description:This SuperSeries is composed of the following subset Series: GSE18182: Expression profile of lung adenocarcinoma, A549 cells following targeted depletion of non metastatic 2 (NME2/NM23 H2) GSE18284: Genomic binding sites of non-metastatic 2 (NME2) across promoters in lung cancer A549 cells Refer to individual Series

2011-02-08 | E-GEOD-18285 | biostudies-arrayexpress

Homo sapiens

Project description:Genome-wide maps of NME2 in A549 lung adenocarcinoma cells.

| PRJNA173992 | ENA

Homo sapiens

Project description:Genome-wide analysis of miR-509-3p-mediated gene silencing in A549 lung cancer cells

| PRJNA205950 | ENA