Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chryseobacterium sp. FH1

ABSTRACT: Epilithonimonas sp. FH1 Genome sequencing and assembly

PROVIDER: PRJNA255519 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR28530746_1.fastq.gz	Fastqsanger.gz
	SRR28530746_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Pseudomonas sp. FH1

Project description:Pseudomonas sp. FH1 Genome sequencing and assembly

| PRJNA186799 | ENA

Genome-wide expression profile in Fh1-competent vs Fh1-deficient mouse kidney cells

Project description:Comparison of the transcriptome of immortalised mouse kidney epithelial cells either wt for Fh1 or Fh1-deficient. The cells were isolated from kidneys of P5 mouse(see Frezza et al, Nature 2011). Briefly, Fh1_fl (flox) are wt for Fh1 (floxed cassette not excised), clone 1 and clone 19 are two different Fh1-deificent clones (floxed cassette excised) and Rec are clone 19 with reconstituted Fh1 expression from exogenous plasmid.

2016-09-22 | GSE77541 | GEO

ChIPmentation of FOXA2 in Fh1-WT and Fh1-KO cells

Project description:To identify the genomic location of FOXA2 in Fh1-WT and Fh1-KO cells.

2022-09-01 | E-MTAB-11785 | biostudies-arrayexpress

RNA-seq of Fh1-WT and Fh1-KO treated with either siNT or siFoxa2

Project description:To identify the transcriptional targets of Foxa2, we treated Fh1-WT or Fh1-KO cells with either siNT or siFoxa2 and subsequent RNA-sequencing.

2022-09-01 | E-MTAB-11782 | biostudies-arrayexpress

Chryseobacterium

Project description:Epilithonimonas sp. overview

| PRJNA310364 | ENA

ATAC-seq of Fh1-WT, Fh1-KO and Fh1-rec cells

Project description:ATAC-seq of Fh1-WT, Fh1-KO and Fh1-rec cells

| PRJEB53367 | ENA

Bacillus subtilis strain:FH1

Project description:Bacillus subtilis strain:FH1 Genome sequencing and assembly

| PRJNA552168 | ENA

Francisella philomiragia strain:FH1

Project description:Francisella philomiragia strain:FH1 Genome sequencing and assembly

| PRJNA895097 | ENA

H3K27ac ChIP-seq of Fh1-WT, Fh1-KO and Fh1-rec cells

Project description:H3K27ac ChIP-seq of Fh1-WT, Fh1-KO and Fh1-rec cells

| PRJEB53366 | ENA

Analysis of differential gene expression in the degradation of doxycycline by Chryseobacterium sp. WX1

Project description:We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-12 | GSE242785 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data