Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xaviernesmea oryzae strain:B4P

ABSTRACT: Xaviernesmea oryzae strain:B4P Genome sequencing

PROVIDER: PRJNA257886 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5413430_subreads.fastq.gz	Fastqsanger.gz
	SRR5413431_subreads.fastq.gz	Fastqsanger.gz
	SRR5413424_subreads.fastq.gz	Fastqsanger.gz
	SRR5413425_subreads.fastq.gz	Fastqsanger.gz
	SRR5413426_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Xaviernesmea oryzae strain:1.7048

Project description:Xaviernesmea oryzae strain:1.7048 Genome sequencing and assembly

| PRJNA344729 | ENA

Xaviernesmea oryzae

Project description:Rhizobium oryzae overview

| PRJNA344813 | ENA

Xaviernesmea rhizosphaerae strain:MH17

Project description:Xaviernesmea rhizosphaerae strain:MH17 Genome sequencing and assembly

| PRJNA344723 | ENA

Xaviernesmea rhizosphaerae strain:RD15

Project description:Xaviernesmea rhizosphaerae strain:RD15 Genome sequencing and assembly

| PRJNA357196 | ENA

Xaviernesmea oryzae strain:cgmcc 1.7048

Project description:Rhizobium oryzae CGMCC 1.7048 genome sequencing

| PRJNA303536 | ENA

Rice roots: Non-colonized (sterile) control vs. infected with Xanthomonas oryzae pv. oryzae strain PXO99 (Xan)

Project description:Transcriptional profiling of Oryza sativa japonica Nipponbare roots after 14 days post infection with Xanthomonas oryzae pv. oryzae strain PXO99 , the goal is to understand the transcriptomic response of rice roots to colonization by bacterial pathogen

2019-09-01 | GSE136706 | GEO

Xaviernesmea rhizosphaerae

Project description:Xaviernesmea rhizosphaerae overview

| PRJNA1367701 | ENA

Xaviernesmea rhizosphaerae

Project description:Xaviernesmea rhizosphaerae overview

| PRJNA1376162 | ENA

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

Project description:Transcription profiling of the DSF regulon in Xanthomonas oryzae pv. oryzae (Xoo) using wild type and the rpfF mutant. Cell-cell signaling mediated by the quorum sensing molecule known as Diffusible Signaling factor (DSF) is required for virulence of Xanthomonas group of plant pathogens. DSF in different Xanthomonas and the closely related plant pathogen Xylella fastidiosa regulates diverse traits in a strain specific manner. The transcriptional profiling performed in this study is to elucidate the traits regulated by DSF from the Indian isolate of Xanthomonas oryzae pv. oryzae, which exhibits traits very different from other Xanthomonas group of plant pathogen. In this study, transcription analysis was done between a wild type Xanthomonas oryzae pv. oryzae strain and an isogenic strain that has a mutation in the DSF biosynthetic gene rpfF.

2011-04-02 | GSE27809 | GEO

Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1

Project description:African Xanthomonas oryzae pv. oryzae strains seem most closely related to and share several genetic features with pathovar oryzicola despite causing symptoms of bacterial leaf blight. The ability of most Xanthomonas plant pathogenic bacteria to infect their host relies on the action of a specific family of type III effectors called the TAL effectors. These microbial transcription factors are injected into the plant and manipulate the host transcriptome upon binding to the promoters of plant genes. The genes whose induction is of benefit to the pathogen are called susceptibility genes. RNA profiling experiments in rice using the Malian Xoo strain MAI1 and in silico prediction of TAL effector binding sites were carried out to identify candidate targets of TalB, revealing OsTFX1, a bZIP transcription factor previously identified as a bacterial blight S gene, and OsERF#123, which encodes a subgroup IXc AP2/ERF transcription factor.

2018-03-31 | GSE108504 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data