Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Root associated fungus metagenome

ABSTRACT: Determining the impact of forest mortality in semi-arid woodlands on local and regional carbon dynamics

PROVIDER: PRJNA259908 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1619320.fastq.gz	Fastqsanger.gz
	SRR1619330.fastq.gz	Fastqsanger.gz
	SRR1619340.fastq.gz	Fastqsanger.gz
	SRR1619321.fastq.gz	Fastqsanger.gz
	SRR1619331.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Expression data from arabidopsis root in response to boron toxicity

2011-11-01 | GSE32659 | GEO

Onobrychis viciifolia Proteomics

Project description:Sainfoin (Onobrychis viciifolia) is a leguminous forage widely planted in arid and semi-arid areas. Prolonged drought stress can significantly damage sainfoin growth, resulting in lower yield and quality, and in severe cases, plant mortality. As a result, studying sainfoin's drought response pathways is extremely important. In this work, we compared two sainfoin (DRL, drought-tolerant; DSM, drought-sensitive) in terms of protein regulation.

2025-09-22 | PXD068658 |

Transcriptome signature of local native cattle of Ladakh region from high altitude and Sahiwal cattle from low altitude (sea level).

Project description:The transcriptome signature of peripheral blood mononuclear cells (PBMCs) of Ladakhi cattle adapted to high altitude vis a vis Sahiwal cattle adapted to the arid/semi-arid region at mean sea level was established using bovine expression microarray chips. The transcriptome analysis of PBMCs from these cattle types living at two distinct altitudes, resulted in identification of several hundred differentially expressed genes, biological processes, molecular functions and pathways.

2021-07-09 | GSE116800 | GEO

bacteria, fungi, protists, nematodes

Project description:multitrophic interactions in semi-arid and arid environments

| PRJNA1241245 | ENA

soil metagenome

Project description:microbial community in arid and semi-arid desert

| PRJDB11638 | ENA

soil metagenome

Project description:Semi arid steppe soil Metagenome

| PRJNA194082 | ENA

Expression data from arabidopsis root in response to boron toxicity

Project description:Boron is an essential micronutrient for plants and is taken up in the form of boric acid (BA). Despite this, a high BA concentration is toxic for the plants, inhibiting root growth and is thus a significant problem in semi-arid areas in the world. In this work, we report the molecular basis for the inhibition of root growth caused by boron. We used microarrays to detail the global gene expression underlying boron toxicity in roots. 5-day-old arabidopsis plants were transferred to medium with high boron concentration (½ MS medium supplemented with 5mM BA) and control conditions (½ MS medium). We determined that 5 mM BA is the minimum concentration that produces the maximum effect, stunting root growth by ~50% after 5 days as compared with control conditions. We analyzed the transcript profiles in roots by microarray analysis (Affymetrix ATH1 Genome Array). We compared the transcripts obtained at 12 hrs of BA treatment.

2011-11-01 | E-GEOD-32659 | biostudies-arrayexpress

Gypsum soil bacteria

Project description:Bacteria in semi-arid gypsum soils

| PRJEB4887 | ENA

rhizosphere metagenome

Project description:semi-arid steppe Raw sequence reads

| PRJNA288432 | ENA

Drought induced transcriptomic changes in tobacco

Project description:The drought stress is one of key adverse environmental factors limiting plant growth and development, even threating global crop productivity in many arid and semi-arid regions. Drought stress usually causes huge economic losses for tobacco industries. Understanding how plants respond and adapt to the drought stress helps generate engineered plants with enhanced drought resistance. In this study, integrative analyses of multiple time point-related transcriptome and metabolome generated from K326 and its derived mutant 28 (M28) with contrasting drought tolerance. We found that dramatic changes of gene expression profiles between M28 and K326 before and after drought treatment.

2022-09-26 | GSE214048 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data