Soil metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA263676 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR1616020.fastq.gz | Fastqsanger.gz | |||
| SRR1616030.fastq.gz | Fastqsanger.gz | |||
| SRR1616040.fastq.gz | Fastqsanger.gz | |||
| SRR1616011.fastq.gz | Fastqsanger.gz | |||
| SRR1616021.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 36 |
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Project description:Description: Bacterial and fungal exometabolites were harvested from MetaFlowTrain. Bacteria and fungi were grown in various peat washes within the MetaFlowTrain system. Two milliliters of exometabolites were collected at two different timepoints 24 hours and 62 hours from the MetaFlowTrain output and subsequently extracted (for more details, see publication).
There are four folders:
- "221208_Guillaume_Chambers_AA"
- "221208_Guillaume_Chambers_TCA&Gly"
- "230530_Guillaume_Chambers_AA"
- "230530_Guillaume_Chambers_TCA&Gly".
Data in the folders from 221208 were used to build Figure 2, while data from 230530 were used for Figures 3 and 4.
Filenames depict, in order: the sample number, the microbial inoculum in the first chamber, the microbial inoculum in the second chamber, and the peat wash used. F stands for fungi, B for bacteria, and X for mock (e.g., "01_F_B_Peat1" indicates sample number 1, fungi in the first chamber, bacteria in the second chamber, and peat wash 1).
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Project description:In order to get insights into the ability of ectomycorrhizal fungi to perceive their biotic environment as well as into the mechanisms of the interactions between ectomycorrhizal fungi and soil bacteria, we analysed the transcriptomic response of the ectomycorrhizal fungus L. bicolor and of two beneficial, and neutral soil bacteria during their interactions in vitro.
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