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Litchi chinensis

ABSTRACT: MicroRNAs and targets in senescent fruit of litchi during ambient storage and post cold storage shelf-life.

PROVIDER: PRJNA268587 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1663663.fastq.gz	Fastqsanger.gz
	SRR1663664.fastq.gz	Fastqsanger.gz
	SRR1663665.fastq.gz	Fastqsanger.gz
	SRR1663666.fastq.gz	Fastqsanger.gz
	SRR1663667.fastq.gz	Fastqsanger.gz

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Similar Datasets

MicroRNAs and targets in senescent fruit of litchi during ambient storage and post cold storage shelf-life.

Project description:Background: Litchi has high commercial value for its bright color and rich nutrients. However, it deteriorates with the pericarp turning brown within 1-2 days after harvest. The factors that mediate litchi fruit senescence are complicated. MicroRNAs act as negative regulators involving in almost every physiological process. To understand the mechanism of litchi fruit senescence and pericarp browning from miRNA level, five small RNA libraries and a degradome library from the pericarp of litchi fruit stored at ambient and post cold shelf-life were sequenced. Results: By aligning the sRNA reads onto litchi unigene assembly, 296 miRNAs belonging to 49 known miRNA families were first identified from litchi. In addition, eleven litchi-specific miRNAs were identified. Among these, 167 known miRNAs were identified to cleave 197 targets, and three litchi-specific miRNAs were found to have five targets. Through combined analysis of stem-loop quantitative real-time polymerase chain reaction (qRT-PCR) and transcriptome profiling, 14 miRNA-target pairs were found to be actively involved in litchi fruit senescence-related processes, including energy regulation, anthocyanin metabolism, hormone signaling, and pathogen-infection defense. Conclusions: A network of miRNA-target that regulates litchi fruit senescence has been proposed, revealing the miRNA-mediated regulation in senescent litchi fruit. This will aid to develop new strategies to postpone the senescence of litchi fruit and other horticultural products.

2017-02-13 | GSE63658 | GEO

Transcriptome analysis of Litchi chinensis under inoculated with P.litchii treatments

Project description:To investigate the potential mechanism of disease resistance in Litchi, a genome-wide transcriptomic analysis was carried out using 'Guiwei' and 'Yurong1' Litchi under inoculated with P.litchii treatments.

2022-08-01 | GSE201243 | GEO

Transcriptome analysis of the litchi fruit borer (Conopomorpha sinensis)

Project description:Purpose: transcriptome sequencing of Conopomorpha sinensis Methods: high-through Illumina HiSeqTM 2000 Results:66017 transcripts,35383 unigenes Conclusions:This study provided valuable transcriptome data for the litchi fruit borer, which was the first fundamental genomic basis for exploiting gene resources from the litchi fruit borer

2018-03-03 | GSE67194 | GEO

Litchi chinensis

Project description:De novo assembly and characterization of Litchi fruit transcriptome

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Litchi chinensis

Project description:De novo assembly and characterization of Litchi fruit transcriptome

| PRJNA194467 | ENA

Transcriptomics‐based analysis of the causes of “sugar receding” in ‘Feizixiao’ litchi (Litchi chinensis Sonn.) pulp

Project description:Transcriptome sequencing of ‘Feizixiao' litchi pulp at 35, 63 and 69 days after anthesis

2022-11-29 | GSE218876 | GEO

Genome-wide identification and expression analysis of MADS-box family genes in litchi (Litchi chinensis Sonn.) and their involvement in floral organogenesis II

Project description:Litchi possesses unique ﬂower morphology and adaptive reproduction strategies. Although previous attention has been intensively devoted to the mechanisms underlying its floral induction, the molecular basis of flower organ development remains largely unknown. MADS-box genes are promise candidates for this due to their significant roles in various aspects of inflorescence and flower organogenesis. Here, we present a detailed overview of phylogeny and expression profiles of 101 MADS-box genes that were identified in litchi. These LcMADSs are unevenly located across the 15 chromosomes, and can be divided into type I and type II genes. Fifty type I MADS-box genes are sub-divided into Mα, Mβ and Mγ subgroups, while fifty-one type II LcMADSs consist of 37 MIKCC -type and 14 MIKC*-type genes. Both two types of LcMADS genes mainly contain ABA and MeJA response elements. Tissue-specific and development-related expression analysis reveals that LcMADS51 could be positively involved in litchi carpel formation, while six MADS-box genes including LcMADS42/46/47/75/93/100 play a possible role in stamen development. GA is positively involved in the sex determination of litchi flowers by regulating the expression of LcMADS75 (LcAP1) and LcMADS51 (LcSTK). However, JA probably plays a negative role in litchi flower development.

2021-10-27 | GSE182444 | GEO

Genome-wide identification and expression analysis of MADS-box family genes in litchi (Litchi chinensis Sonn.) and their involvement in floral organogenesis I

2021-10-27 | GSE182439 | GEO

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Project description:Litchi chinensis overview

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Project description:Seed biology of Litchi

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