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Pseudomonas putida BIRD-1

ABSTRACT: Genome-wide maps of the effect of butanol in P. putida BIRD1

OTHER RELATED OMICS DATASETS IN: PXD002679PXD002655

PROVIDER: PRJNA276156 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR1814130.fastq.gz	Fastqsanger.gz
	SRR1814131.fastq.gz	Fastqsanger.gz
	SRR1814132.fastq.gz	Fastqsanger.gz
	SRR1814133.fastq.gz	Fastqsanger.gz
	SRR1814134.fastq.gz	Fastqsanger.gz

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Proteomics of Pseudomonas putida BIRD-1

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Proteomics of Pseudomonas putida BIRD-1

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Project description:Alginate, a major exopolysaccharide (EPS) produced by P. putida, is known to create hydrated environments and alleviate the effect of water limitation. In addition to alginate, P. putida is capable of producing cellulose (bcs), putida exopolysaccharide a (pea), and putida exopolysaccharide b (peb). However, unlike alginate, not much is known about their roles under water limitation. Hence, in this study we examined the role of different EPS under water stress. To create environmentally realistic water stress conditions as observed in soil, we used Pressurized Porous Surface Model (PPSM). Our main hypothesis was that under water stress, absence of alginate would be compensated by the other EPS. To test our hypothesis, we investigated colony morphologies and whole genome transcriptomes of P. putida KT2440 WT and its mutants deficient in either alginate or all known EPS

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Project description:Pseudomonas putida BIRD-1 genome sequencing project.

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