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Dorcoceras hygrometricum

ABSTRACT: Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica (10%, 50% and 100%)

PROVIDER: PRJNA277046 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1824521.fastq.gz	Fastqsanger.gz
	SRR1824522.fastq.gz	Fastqsanger.gz
	SRR1824523.fastq.gz	Fastqsanger.gz
	SRR1824524.fastq.gz	Fastqsanger.gz
	SRR1824525.fastq.gz	Fastqsanger.gz

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Dorcoceras hygrometricum

Project description:Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica

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Global transcriptome analysis reveals major roles for protein quality control, autophagy, and reactive oxygen species scavenging during the acquisition of desiccation tolerance in the resurrection plant Boea hygrometrica

Project description:Transcriptional profiling of resurrection plant Boea hygrometrica comparing control untreated plants with plants treated with dehydration. Goal was to determine the different effects of desiccation with different rates, and drought acclimation on global gene expression in Boea hygrometrica . 8 conditions comparison: untreated plants vs. plants treated with rapid dehydration for 2h (RWC~80%) and 48h (RWC<10%), untreated plants vs.plants treated with slow dehydration for 5d (RWC~80%) and 14d (RWC<10%), untreated plants vs. drought acclimated plants treated with rapid dehydration for 2h (RWC~80%) and 48h (RWC<10%). Biological replicates: 3 control replicates, 3 treated replicates.

2013-12-07 | E-GEOD-53058 | biostudies-arrayexpress

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Genome-wide DNA methylation maps during dehydration in leaf tissues of Boea hygrometrica

Project description:To examine the Boea hygrometrica genome methylation landscape and assess its functional significance during dehydration, we generated the first single-base resolution genome methylation maps for leaf tissues of hydrated, dehydrating to 70% RWC and dehydrating to 10% RWC (desiccating). The overall density of methyl-cytosine was not broadly altered by dehydration. There is, however, a small increase in intensity both for the whole genome and regionally during the first dehydration step (70% RWC) returning to near hydrated levels as leaves desiccate. We identified 5575 differentially methylated region-related genes during dehydration. The finding may provide an important clue for exploring molecular mechanisms and the regulation of desiccation tolerance at the whole-genome level.

2016-07-13 | GSE48904 | GEO

Dorcoceras hygrometricum

Project description:Global transcriptome analysis reveals major roles for protein quality control, autophagy, and reactive oxygen species scavenging during the acquisition of desiccation tolerance in the resurrection plant Boea hygrometrica

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Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica

2015-04-22 | GSE48671 | GEO

Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica (10%, 50% and 100%)

Project description:Gene transcript abundances were analyzed with samples taken from desiccated (10% RWC), rehydrated to 50% RWC (RE50% RWC) and rehydrated to 100% RWC (RE100% RWC) leaf tissues of resurrection plant species B. hygrometrica by using RNA-Seq. Totally, 10207 genes were identified as differentially expressed genes.The results provided insight for exploring the mechanisms of desiccation tolerance.

2018-02-22 | GSE66474 | GEO

Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica

Project description:Gene transcript abundances were analyzed with samples taken from hydrated, moderate dehydration (70% RWC) and desiccated (10% RWC) leaf tissues of resurrection plant species B. hygrometrica by using RNA-Seq. Totally, 9888 genes were identified as differentially expressed genes.The results provided insight for exploring the mechanisms of desiccation tolerance. Examination of mRNA transcript abundances in hydrated, dehydrating to 70% RWC and dehydrating to 10% RWC leaf tissues, for each treatment, three biological replicates were included.

2015-04-22 | E-GEOD-48671 | biostudies-arrayexpress

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