Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Physcomitrium patens

ABSTRACT: Genome-wide small RNAtranscriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

PROVIDER: PRJNA277372 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1842130.fastq.gz	Fastqsanger.gz
	SRR1842131.fastq.gz	Fastqsanger.gz
	SRR1842132.fastq.gz	Fastqsanger.gz
	SRR1842133.fastq.gz	Fastqsanger.gz
	SRR1842134.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Physcomitrium patens

Project description:Genome-wide transcriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

| PRJNA277025 | ENA

Genome-wide DNA methylation maps during rehydration in gametophores of Physcomitrella patens.

Project description:To examine the P. patens genome-wide methylation landscape and assess its functional significance during dehydration, we generated the first single-base resolution genome methylation maps for P. patens gametophores of hydrated (HD), moderate dehydrated (MDH), severe dehydrated (SDH), partially recovered (PRE) and fully recovered (FRE). The overall density of methyl-cytosine was not broadly altered by dehydration and recovery. There is, however, a small increase in intensity both for the whole genome and regionally during MDH and FRE. Only 225 differentially expressed genes were located in differentially methylated regions (DMRs) during the dehydration-recovery cycle. The finding may provide an important clue for exploring molecular mechanisms and the regulation of desiccation tolerance at the whole-genome level.

2018-02-22 | GSE66485 | GEO

Physcomitrium patens

Project description:Genome-wide DNA methylation maps during rehydration in gametophores of Physcomitrella patens.

| PRJNA277055 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-C08

| PRJNA424281 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-D01

| PRJNA424283 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-I09

| PRJNA424291 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-I05

| PRJNA424287 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-I08

| PRJNA424290 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-C07

| PRJNA424280 | ENA

Physcomitrium patens cultivar:patens

Project description:Transcriptome of Physcomitrella patens patens Gametophores - 002-I04

| PRJNA424286 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data