Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arcobacter ellisii strain:LMG 26155

ABSTRACT: Arcobacter ellisii strain:LMG 26155 Genome sequencing and assembly

PROVIDER: PRJNA284966 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR7588930_subreads.fastq.gz	Fastqsanger.gz
	SRR7588925.fastq.gz	Fastqsanger.gz
	SRR7588925_1.fastq.gz	Fastqsanger.gz
	SRR7588925_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Arcobacter cloacae strain:LMG 26153

Project description:Arcobacter cloacae strain:LMG 26153 Genome sequencing and assembly

| PRJNA284964 | ENA

Arcobacter venerupis strain:LMG 26156

Project description:Arcobacter venerupis strain:LMG 26156 Genome sequencing and assembly

| PRJNA284969 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Arcobacter

Project description:Arcobacter cibarius and Arcobacter thereius Genome sequencing and assembly

| PRJNA542783 | ENA

Arcobacter porcinus strain:DU19

Project description:Arcobacter porcinus strain:DU19 Genome sequencing and assembly

| PRJNA283166 | ENA

Arcobacter aquimarinus strain:W63

Project description:Arcobacter aquimarinus strain:W63 Genome sequencing and assembly

| PRJNA284970 | ENA

Arcobacter porcinus strain:213

Project description:Arcobacter porcinus strain:213 Genome sequencing and assembly

| PRJNA282911 | ENA

Arcobacter porcinus strain:216

Project description:Arcobacter porcinus strain:216 Genome sequencing and assembly

| PRJNA282917 | ENA

Arcobacter porcinus strain:117434

Project description:Arcobacter porcinus strain:117434 Genome sequencing and assembly

| PRJNA283165 | ENA

Aliarcobacter thereius LMG 24486

Project description:Arcobacter thereius LMG 24486T genome sequencing and assembly

| PRJNA283692 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data