Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 454 sequencing project for 14 marine invertebrates

PROVIDER: PRJNA288084 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2077860.fastq.gz	Fastqsanger.gz
	SRR2077870.fastq.gz	Fastqsanger.gz
	SRR2077862.fastq.gz	Fastqsanger.gz
	SRR2077853.fastq.gz	Fastqsanger.gz
	SRR2077864.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

The immuno-modulation of exosomes via miRNAs in Zhikong scallop Chlamys farreri

Project description:As marine invertebrates, scallops lack adaptive immunity and employ innate immunity as the front line and almost the solo defense mechanism to protect them against invaders. Accumulating research achievements demonstrated that exosomes could act as innate immune effectors that contribute to host defense mechanism. To better understand the immune functions of exosomes in Chlamys farreri, miRNA profiles of hemocytes from scallops injected with PBS, with normal exosomes and LPS stimulating exosomes, respectively, were generated by deep sequencing, in triplicate.

2022-11-12 | GSE140219 | GEO

Project description:MDBC Marine Invertebrates

| PRJNA1367555 | ENA

Project description:USNM Marine Invertebrates

| PRJNA1367561 | ENA

RNA-seq reveals the immuno-modulation of exosomes in Zhikong scallop Chlamys farreri

Project description:As marine invertebrates, scallops lack adaptive immunity and employ innate immunity as the front line and almost the solo defense mechanism to protect them against invaders. Accumulating research achievements demonstrated that exosomes could act as innate immune effectors that contribute to host defense mechanism. To better understand the immune functions of exosomes in Chlamys farreri, mRNA profiles of hemocytes from scallops injected with PBS, with normal exosomes and LPS stimulating exosomes, respectively, were generated by deep sequencing, in triplicate.

2022-11-08 | GSE140176 | GEO

Project description:16SrRNA Mediterranean marine invertebrates

| PRJNA615777 | ENA

Project description:Transcriptome sequencing of deep marine invertebrates

| PRJNA1039758 | ENA

Project description:Microbial Symbionts of Marine Invertebrates

| PRJNA1210165 | ENA

Project description:Actinobacteria diversity in marine invertebrates

| PRJNA1266703 | ENA

High-throughput sequencing of small RNAs from Arabidopsis thaliana

Project description:High-throughput sequencing of Arabidopsis thaliana endogenous small RNAs by 454 pyrosequencing. Keywords: high-throughput sequencing

2006-11-02 | GSE5228 | GEO

Transcriptome response to salinity stress in Crassostrea hongkongensis

Project description:Low salinity is one of the main factors limiting the distribution and survival of marine species. As estuarine species, Crassostrea hongkongensis can live in relative low salinity. Through Illumina sequencing, we generated two transcriptomes with samples taken from gills of oysters exposed to the low salinity seawater versus the optimal seawater. By RNAseq technology, we found 13550 up-regulation genes and 9914 down-regulation genes that may regulate osmotic stress in C. hongkongensis. As blasted by GO annotation and KEGG pathway mapping, functional annotation of the genes recovered diverse biological functions and processes. The genes regulated significantly were dominated in structural molecule activity, intracellular,cytoplasm protein metabolism, biosynthesis,cell and transcription regulator activity according to GO annotation. The study aimed to compare the expression data of the two transcriptomes to provide some useful insights into signal transduction pathways in oysters and offer a number of candidate genes as potential markers of tolerance to hypoosmotic stress for oysters. In addition, the characterization of C. hongkongensis transcriptome will facilitate research into biological processes underlying physiological adaptations to hypoosmotic shock for marine invertebrates. Twelve oysters were exposed in low salinity (8‰) seawater and in optimal salinity (25‰) seawater,respectively. Gills from six oysters in each condition were balanced mixed respectively. The transcriptomes of two samples were generated by deep sequencing, using Illumina HiSeq2000

2014-10-01 | E-GEOD-51157 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data