Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Freshwater sediment metagenome

ABSTRACT: Microbial communities of bottom sediments of Lake Baikal before and after thermobaric cultivation Metagenome

PROVIDER: PRJNA292045 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2146995.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Eutrophication and warming rapidly alter microbial community compositions in the mangrove sediment

Project description:To study the responses of microbial communities to short-term nitrogen addition and warming,here we examine microbial communities in mangrove sediments subjected to a 4-months experimental simulation of eutrophication with 185 g m-2 year-1 nitrogen addition (N), 3oC warming (W) and nitrogen addition*warming interaction (NW).

2022-03-01 | GSE190739 | GEO

A transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.

Project description:We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph and two non-methanotrophic methylotrophs.

2016-12-26 | GSE85736 | GEO

Freshwater sediment metagenome

Project description:Analysis of microbial communities from sediments in Lake Superior

| PRJNA668983 | ENA

Improving protein extraction for metaproteomic analysis of marine sediment with high clay content

Project description:Marine sediments harbor highly diverse microbial communities that contribute to global biodiversity and play essential roles in the ecosystem functioning. However, the metaproteome of marine sediments remains poorly understood. Extracting proteins from environmental samples can be challenging, especially in marine sediments due to their complex matrix. Few studies have been conducted on improving protein extraction methods from marine sediments. To establish an effective protein extraction workflow for clay-rich sediments, we compared, combined and improved several protein extraction methods. The presented workflow includes blocking of protein binding sites on sediment particles with high concentrations of amino acids, effective cell lysis via ultra-sonication, and the electro-elution and simultaneous fractionation of proteins. Using this workflow, we were able to recover 100% of the previously added Escherichia coli proteins from the sediment.

2025-05-12 | PXD054260 | Pride

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M20 metagenome

| PRJNA465088 | ENA

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L17 metagenome

| PRJNA465091 | ENA

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N15 metagenome

| PRJNA465092 | ENA

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L15 metagenome

| PRJNA465095 | ENA

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N14 metagenome

| PRJNA465096 | ENA

freshwater sediment metagenome

Project description:Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.J12 metagenome

| PRJNA465097 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data