Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Prokaryotic diversity in subsoil compartments

PROVIDER: PRJNA293151 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2176100.fastq.gz	Fastqsanger.gz
	SRR2176110.fastq.gz	Fastqsanger.gz
	SRR2176120.fastq.gz	Fastqsanger.gz
	SRR2176130.fastq.gz	Fastqsanger.gz
	SRR2176101.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

soil metagenome

Project description:Forest subsoil metagenome

| PRJNA783873 | ENA

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

soil metagenome

Project description:Soil prokaryotic and eukaryotic diversity in translocated meadows, surrounding area and control meadows

| PRJNA690901 | ENA

soil metagenome

Project description:Metagenomics and culturomics reveal prevalence of truncated denitrification pathways in agricultural subsoil

| PRJNA767176 | ENA

soil metagenome

Project description:Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)

| PRJNA278020 | ENA

aquatic metagenome

Project description:Temperate invertebrates associated prokaryotic diversity

| PRJNA268033 | ENA

termite gut metagenome

Project description:Microbial communities in different compartments of Labiotermes labralis gut - prokaryotic metatranscriptomes

| PRJNA633837 | ENA

Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia.

Project description:Here, we report 17 metagenome-assembled genomes (MAGs) recovered from microbial consortia of forest and pasture soils in the Brazilian Eastern Amazon. The bacterial MAGs have the potential to act in important ecological processes, including carbohydrate degradation and sulfur and nitrogen cycling.

| S-EPMC9670897 | biostudies-literature

Prospecting for novel biocatalysts in a soil metagenome.

Project description:The metagenomes of complex microbial communities are rich sources of novel biocatalysts. We exploited the metagenome of a mixed microbial population for isolation of more than 15 different genes encoding novel biocatalysts by using a combined cultivation and direct cloning strategy. A 16S rRNA sequence analysis revealed the presence of hitherto uncultured microbes closely related to the genera Pseudomonas, Agrobacterium, Xanthomonas, Microbulbifer, and Janthinobacterium. Total genomic DNA from this bacterial community was used to construct cosmid DNA libraries, which were functionally searched for novel enzymes of biotechnological value. Our searches in combination with cosmid sequencing resulted in identification of four clones encoding 12 putative agarase genes, most of which were organized in clusters consisting of two or three genes. Interestingly, nine of these agarase genes probably originated from gene duplications. Furthermore, we identified by DNA sequencing several other biocatalyst-encoding genes, including genes encoding a putative stereoselective amidase (amiA), two cellulases (gnuB and uvs080), an alpha-amylase (amyA), a 1,4-alpha-glucan branching enzyme (amyB), and two pectate lyases (pelA and uvs119). Also, a conserved cluster of two lipase genes was identified, which was linked to genes encoding a type I secretion system. The novel gene aguB was overexpressed in Escherichia coli, and the enzyme activities were determined. Finally, we describe more than 162 kb of DNA sequence that provides a strong platform for further characterization of this microbial consortium.

| S-EPMC201203 | biostudies-literature

soil metagenome

Project description:Soil prokaryotic communities under long-term fertilization

| PRJNA392865 | ENA