Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human metagenome

ABSTRACT: Tissue Metagenome Raw sequence reads

PROVIDER: PRJNA297250 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2570960_1.fastq.gz	Fastqsanger.gz
	SRR2570960_2.fastq.gz	Fastqsanger.gz
	SRR2570970_1.fastq.gz	Fastqsanger.gz
	SRR2570970_2.fastq.gz	Fastqsanger.gz
	SRR2570980_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 262

Similar Datasets

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

human metagenome

Project description:Breast tissue microbiome - Raw sequence reads

| PRJNA759366 | ENA

human oral metagenome

Project description:Tonsil tissue samples Raw sequence reads

| PRJNA286064 | ENA

Fruit and vegetable supplemented-diet ameliorates dextran sodium sulfate (DSS) -induced colitis by modulating host transcriptome and gut metagenome response

Project description:Dietary intake of fruits and vegetables (FV) has been inversely associated with lower risk of ulcerative colitis. A pig model was used to evaluate the impact of feeding FV on the host response to dextran sulfate sodium (DSS)-induced colitis. Methods: Six-week-old pigs were fed a grower diet alone or supplemented with lyophilized FV equivalent to the half (half-FV) or full (full-FV) daily levels recommended for humans by the Dietary Guidelines for Americans (DGA). Pigs were fed a 1) grower diet alone (negative control), 2) grower diet and orally treated with 4% DSS for 10 days to induce colitis (positive control), 3) half-FV diet treated with 4% DSS or 4) full-FV diet treated with 4% DSS. Pigs were monitored for the development of clinical signs of colitis. Proximal colon (PC) contents and mucosa (PCM) were collected for gut metagenome, tissue transcriptome and histopathological analysis. Results: Pigs fed the full-FV diet did not exhibit diarrhea, showed less fecal occult blood (FOB), PCM crypt hyperplasia but with no differential expressed genes (DEG) or changes in PC microbiome diversity (p < 0.05). Pigs within the half-FV group exhibited increased group FOB and DEG associated with tissue remodeling, crypt and goblet cell hyperplasia in the PCM and no changes in PC microbiome diversity and two pigs exhibiting diarrhea (p < 0.05). Pigs within the DSS positive control group exhibited a reduced DEG involved with intestinal immune response and PC microbiome diversity with altered metagenome, increased group PCM erosion and FOB with persistent diarrhea in one pig (p < 0.05) Conclusions: Overall, our results showed that pigs fed a three-week full-FV supplemented diet, were resistant to DSS-induced colitis with a differential dose-dependent protective effect on host intestinal tissue and gut metagenome when exposed to an inflammatory challenge.

2026-04-01 | GSE317287 | GEO

human metagenome

Project description:human metagenome Raw sequence reads

| PRJNA780081 | ENA

human metagenome

Project description:human metagenome Raw sequence reads

| PRJNA657275 | ENA

human metagenome

Project description:human metagenome Raw sequence reads

| PRJNA862562 | ENA

human metagenome

Project description:human metagenome raw sequence reads