Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human Poliovirus

ABSTRACT: Nigeria Sabin-like poliovirus (complete genome)

PROVIDER: PRJNA297585 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2558330.fastq.gz	Fastqsanger.gz
	SRR2558340.fastq.gz	Fastqsanger.gz
	SRR2558350.fastq.gz	Fastqsanger.gz
	SRR2558360.fastq.gz	Fastqsanger.gz
	SRR2558370.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 253

Similar Datasets

Poliovirus Type 1, 2 and 3 strain:Sabin

Project description:Poliovirus Type 1, 2 and 3 strain:Sabin

| PRJNA369470 | ENA

Poliovirus 1

Project description:Poliovirus 1 Genome sequencing

| PRJNA231946 | ENA

Modulation of gene expression in a human cell line caused by poliovirus, vacciniavirus and interferon

Project description:A human embryonic fibroblast cell line was synchronously infected with poliovirus in the absence or presence of interferon-α, or with vacciniavirus, a virus that is not inhibited by interferon. The titers were sufficient to yield productive infection in a majority of the cells. The cells were harvested in triplicate at various time-points, and the transcriptosome compared with mock infected cells using oligo-based 35 k microarrays. The project had two purposes: to characterize the cellular response and to look for candidate genes involved in viral defense. The changes in gene expression due to vaccinia virus did not correspond to those caused by poliovirus. More surprisingly, neither did the changes when comparing 8 h and 16 h of poliovirus infection. However, a large proportion of the genes up-regulated by interferon-α were also up-regulated by poliovirus, both at 8 h and 16 h. Interferon-α inhibited poliovirus replication, thus the observations suggest that the cells do launch an antiviral response to poliovirus. Moreover, as interferon genes were not induced, the data indicate that several of the relevant genes can be activated in an interferon independent manner. Further analyses of the data led to a list of candidate antiviral genes. Functional information was limited, or absent, for most of these genes. Keywords: Poliovirus; Vacciniavirus; Interferon; Microarray; Gene expression; Defense genes

2006-10-16 | GSE5549 | GEO

Poliovirus 2

Project description:Poliovirus 2 Raw sequence reads

| PRJNA313030 | ENA

Project description:Complete genome sequences of type 2 Sabin-like poliovirus from Nigerian poliovirus surveillance, 2016-2018

| PRJNA779084 | ENA

Enterovirus C strain:Poliovirus

Project description:Poliovirus Recombination from natural co-infection

| PRJNA648771 | ENA

Poliovirus 1 strain:Mahoney

Project description:Poliovirus intrahost evolution is required to overcome tissue-specific innate responses

| PRJNA383905 | ENA

Mus musculus strain:poliovirus DVG eTIP1

Project description:Mus musculus strain:poliovirus DVG eTIP1 Raw sequence reads

| PRJNA781226 | ENA

Poliovirus 2 strain:Type 2 | isolate:nOPV2

Project description:Novel Engineered Poliovirus, type 2 Raw sequence reads

| PRJNA605034 | ENA

Enterovirus C strain:poliovirus 2

Project description:Sporadic detection of vaccine-derived poliovirus type 2 using next-generation sequencing in Canadian wastewater in August of 2022

| PRJNA1186727 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data