Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Maritalea mobilis strain:CGMCC 1.7002

ABSTRACT: Zhangella mobilis CGMCC 1.7002 genome sequencing

PROVIDER: PRJNA303831 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR4159437_1.fastq.gz	Fastqsanger.gz
	SRR4159437_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Marinobacter mobilis strain:cgmcc 1.7059

Project description:Marinobacter mobilis CGMCC 1.7059 genome sequencing

| PRJNA303453 | ENA

Dongia mobilis strain:CGMCC 1.7660

Project description:Dongia mobilis CGMCC 1.7660 genome sequencing

| PRJNA323100 | ENA

Pyruvatibacter mobilis strain:CGMCC 1.15125T

Project description:Pyruvatibacter mobilis strain:CGMCC 1.15125T Genome sequencing

| PRJNA625860 | ENA

Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters

Project description:Limited functional annotation of the Z. mobilis genome is a current barrier to both basic studies of Z. mobilis and its development as a synthetic-biology chassis. To gain insight, we collected sample-matched multiomics data including RNA-seq, transcription start site sequencing (TSS-seq), termination sequencing (term-seq), ribosome profiling, and label-free shotgun proteomic mass spectrometry across different growth conditions to improve annotation and assign functional sites in the Z. mobilis genome. Proteomics and ribosome profiling informed revisions of protein-coding genes, which included 44 start codon changes and 42 added proteins.

2020-07-10 | PXD016962 | Pride

Zymomonas mobilis oxidative stress transcriptomics

Project description:Zymomonas mobilis is an important bioenergy organism that has potential to produce biofuels, including ethanol, in high volumes. Here we examined the response of Zymomonas mobilis to various oxidative stresses using genome-scale transcriptomics data. We first examined the transcrpit abundance in WT aerobic growth compared to aerobic grown in paraquat, which forms superoxide. Under anaerobic growth conditions we compared WT Zymomonas mobilis with strains grown in media lacking iron as well as strains lacking iron that were treated with the iron chelator DIP before collection. Finally we examined transcript abundance in cells lacking ZMO_0422 (Rrf2 family transcription factor homolog) and ZMO_1411 (Fur homolog) grown under anaerobic conditions.

2025-11-20 | GSE304360 | GEO

Transcriptomic analysis of ZMO_0422 in Zymomonas mobilis

Project description:Deletion of the IscR homolog ZMO_0422 was performed in Zymomonas mobilis to investigate the role of Fe-S cluster biogenesis in Zymomonas. Here we perform genome-wide transcirptomics study to examine transcript chagnes in delta-ZMO_0422 compared to WT Zymomonas mobilis under both aerobic and anaerobic growth conditions.

2025-11-20 | GSE304389 | GEO

OxyR regulates the oxidative stress response in Zymomonas mobilis during oxic growth and anoxic biofuel fermentation

Project description:The bacterium Zymomonas mobilis is widely studied for its potential as an industrial biofuel producer. Anoxic fermentation by Z. mobilis in lignocellulosic hydrolysate can generate bioethanol from renewable plant biomass. In this study, we deleted a gene from the Z. mobilis genome encoding a homolog of OxyR, a transcription factor that activates an oxidative stress response in bacteria to reduce reactive oxygen species (ROS). Deletion of this transcription factor inhibited growth of Z. mobilis in oxic, but not anoxic, conditions in laboratory media. RNA-Sequencing was perfromed on wild-type Z. mobilis (ZM4) and ∆oxyR in both oxic and anoxic conditions in rich media (ZRMG). This study reveals the indirect regulon of OxyR in Z. mobilis, which is important for both oxic growth and anoxic biofuel fermentation.

2026-07-31 | GSE332662 | GEO

Transcription profiling of Z. mobilis ZM1 strain and ZM4 strain during exponential growth phase

Project description:Expression profiles of Z. mobilis ZM1 strain and ZM4 strain during exponential growth phase.

2004-11-26 | E-MEXP-217 | biostudies-arrayexpress

Zymomonas mobilis subsp. mobilis strain:ZM4

Project description:Zymomonas mobilis subsp. mobilis 2032 genome sequencing

| PRJNA391966 | ENA

Zymomonas mobilis subsp. mobilis

Project description:Zymomonas mobilis subsp. mobilis Genome sequencing

| PRJNA749177 | ENA