Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Notophthalmus viridescens

ABSTRACT: Notophthalmus viridescens Transcriptome or Gene expression

PROVIDER: PRJNA305738 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2990440_1.fastq.gz	Fastqsanger.gz
	SRR2990440_2.fastq.gz	Fastqsanger.gz
	SRR2990450_1.fastq.gz	Fastqsanger.gz
	SRR2990450_2.fastq.gz	Fastqsanger.gz
	SRR2990460_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Notophthalmus viridescens

Project description:Notophthalmus viridescens Transcriptome or Gene expression

| PRJNA272599 | ENA

Notophthalmus viridescens

Project description:Notophthalmus viridescens overview

| PRJNA191824 | ENA

Notophthalmus viridescens

Project description:Notophthalmus viridescens Raw sequence reads

| PRJNA495656 | ENA

Notophthalmus viridescens strain:Wild-type

Project description:Notophthalmus viridescens strain:Wild-type Transcriptome or Gene expression

| PRJNA187473 | ENA

Notophthalmus viridescens isolate:Wild Collected

Project description:Notophthalmus viridescens chromosome sequencing

| PRJNA317478 | ENA

Notophthalmus viridescens

Project description:Microarray Analysis of microRNA Expression during Notophthalmus viridescens (red-spotted newt) heart regeneration

| PRJNA190051 | ENA

Single cell RNA seq of Cell Multiplexing Oligo, pooled Pleurodeles waltl and Notophthalmus viridescens spleens

Project description:The goal of this study was to test if lipid-based cell hashing worked in salamander species and to test how lipid-based hashing compared to demultiplexing samples based on species origin and single nucleotide polymorphisms (SNP). Spleens were taken from four animals in total: one adult Pleurodeles waltl (female, 23.5grams and 16.1cm snout-to-tail, strain: tgSceI(CAG:loxP-GFP-loxP-Cherry)Simon), one adult Pleurodeles waltl (male, 13.95g and 15.7cm, tgSceI(CAG:loxP-GFP-loxP-Cherry)Simon), one adult Notophthalmus (female, 4.45g and 10.6cm, WT), and one adult Notophthalmus (male, 3.55g and 10.2cm, WT). Samples were stained with CM304 (Pleurodeles female), CMO305 (Pleurodeles male), and CMO306 (pool of both Notophthalmus samples) as per 10x Genomics 3’ Cellplex labeling protocol (Demonstrated Protocol, CG000391). These samples were processed through the 10x Controller and with Cellranger 7.0 using a dual species reference. The sample origin was determined by lipid-based hashing and then compared to mapping rates to each species transcriptome and using SNP-based demultiplexing.

2022-09-21 | E-MTAB-12182 | biostudies-arrayexpress

Comparative transcriptome analysis of transgenic Drosophila misexpressing novel Notophthalmus viridescens (newt) genes

Project description:Comparative transcriptome analysis of transgenic Drosophila misexpressing novel Notophthalmus viridescens (newt) genes

| PRJNA554835 | ENA

Comparative transcriptome analysis of transgenic Drosophila misexpressing novel Notophthalmus viridescens (newt) genes

Project description:To obtain a quick glimpse into possible function of five novel Notopthalmus viridescens (newt) genes (and given certain restrains with transgenic newts, such as time) we express these genes using transgenic Drosophila melanogaster. We generated the transgenic flies containing newt candidate genes, and prepared samples for RNA sequencing to evaluate the overall role of candidate genes in tissue development and layout map for future studies.

2021-11-03 | GSE134348 | GEO

MicroRNA sequencing and analysis of the newt heart

Project description:MicroRNA sequencing using Ion Torrent Proton platform of the undamaged heart of the red spotted newt Notophthalmus viridescens. MicroRNAS were identified using MIRPIPE

2021-05-24 | GSE69537 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data