Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Activated sludge metagenome

ABSTRACT: Bacterial structure of the WWTP activated sludge and incoming sewage with different chemical composition

PROVIDER: PRJNA306487 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3032900.fastq.gz	Fastqsanger.gz
	SRR3032910.fastq.gz	Fastqsanger.gz
	SRR3032920.fastq.gz	Fastqsanger.gz
	SRR3032901.fastq.gz	Fastqsanger.gz
	SRR3032911.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria

Project description:Manufactured nanomaterials (MNMs) are increasingly incorporated into consumer products that are disposed into sewage. In wastewater treatment, MNMs adsorb to activated sludge biomass where they may impact biological wastewater treatment performance, including nutrient removal. Here, we studied MNM effects on bacterial polyhydroxyalkanoate (PHA), specifically polyhydroxybutyrate (PHB), biosynthesis because of its importance to enhanced biological phosphorus (P) removal (EBPR). Activated sludge was sampled from an anoxic selector of a municipal wastewater treatment plant (WWTP), and PHB-containing bacteria were concentrated by density gradient centrifugation. After starvation to decrease intracellular PHB stores, bacteria were nutritionally augmented to promote PHB biosynthesis while being exposed to either MNMs (TiO2 or Ag) or to Ag salts (each at a concentration of 5 mg L-1). Cellular PHB concentration and PhyloChip community composition were analyzed. The final bacterial community composition differed from activated sludge, demonstrating that laboratory enrichment was selective. Still, PHB was synthesized to near-activated sludge levels. Ag salts altered final bacterial communities, although MNMs did not. PHB biosynthesis was diminished with Ag (salt or MNMs), indicating the potential for Ag-MNMs to physiologically impact EBPR through the effects of dissolved Ag ions on PHB producers.

2014-12-03 | GSE63781 | GEO

Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria

2014-12-03 | E-GEOD-63781 | biostudies-arrayexpress

Sewage Sludge samples from March-June 2020

Project description:.RAW files and Compound Discoverer peak lists used for a manuscript regarding changes the chemical fingerprint of sewage sludge during the COVID-19 pandemic

2021-01-08 | MSV000086676 | MassIVE

activated sludge metagenome

Project description:Initial activated sewage sludge GCZ12 Metagenome

| PRJNA268585 | ENA

activated sludge metagenome

Project description:Final activated sewage sludge GCZ13 Metagenome

| PRJNA268638 | ENA

WWTP Activated sludge

Project description:WWTP Activated sludge Raw sequence reads

| PRJNA431396 | ENA

activated sludge metagenome

Project description:activated sludge from sewage raw sequence reads

| PRJNA298651 | ENA

Activated sludge macroproteomics

Project description:This data investigates the effect of adding exogenous fortifiers to activated sludge on the degradation of bisphenol A by activated sludge

2025-02-27 | PXD061244 |

activated sludge metagenome

Project description:Activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt metagenome

| PRJNA571455 | ENA

Metaproteomics: Optimization and evaluation of protein extraction from activated sludge

Project description:Metaproteomic studies of full-scale activated sludge systems require reproducible protein extraction methods. A systematic evaluation of three different extractions protocols, each in combination with three different methods of cell lysis, and a commercial kit were evaluated. Criteria used for comparison of each method included the extracted protein concentration and the number of identified proteins and peptides as well as their phylogenetic, cell localization and functional distribution and quantitative reproducibility. Furthermore, the advantage of using specific metagenomes and a 2-step database approach was illustrated. The results recommend a protocol for protein extraction from activated sludge based on the protein extraction reagent B-Per and bead beating.

2014-08-15 | PXD000862 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data