Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Human cervical cells HELP-tagging cytosine methylation data

PROVIDER: PRJNA309179 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3106690.fastq.gz	Fastqsanger.gz
	SRR3106700.fastq.gz	Fastqsanger.gz
	SRR3106710.fastq.gz	Fastqsanger.gz
	SRR3106720.fastq.gz	Fastqsanger.gz
	SRR3106730.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

Homo sapiens

Project description:Hematopoietic stem/progenitor cells HELP-tagging cytosine methylation data

| PRJNA215065 | ENA

Homo sapiens

Project description:Cytosine methylation data generated by HELP-tagging from human osteosarcoma biopsy samples

| PRJNA254720 | ENA

Homo sapiens

Project description:Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)

| PRJNA122627 | ENA

Homo sapiens

Project description:HEK 293T cells HELP-tagging cytosine methylation data treated with 5-aza-2-deoxycytidine

| PRJNA264487 | ENA

Homo sapiens

Project description:Hematopoietic stem/progenitor cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)

| PRJNA231048 | ENA

Homo sapiens

Project description:Peripheral blood mononuclear cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)

| PRJNA187088 | ENA

Homo sapiens

Project description:Human liver HELP-tagging cytosine methylation data corresponding to uninfected non-malignant, HCV+ non-malignant, and HCV+ HCC tissue

| PRJNA324261 | ENA

Homo sapiens immortalized MSCs: KP vs. 3A6

Project description:Gene methylation profiling of immortalized human mesenchymal stem cells comparing HPV E6/E7-transfected MSCs cells with human telomerase reverse transcriptase (hTERT)- and HPV E6/E7-transfected MSCs. hTERT may increase gene methylation in MSCs. Goal was to determine the effects of different transfected genes on global gene methylation in MSCs.

2011-08-25 | GSE23936 | GEO

Homo sapiens immortalized MSCs: KP vs. 3A6

2011-08-24 | E-GEOD-23936 | biostudies-arrayexpress

Human cervical cells HELP-tagging cytosine methylation data

Project description:We pursued the hypothesis that epigenetic regulators of transcription are involved in both the development and the progression of HPV-associated CIN. Using HELP-tagging, we performed the most comprehensive study to date of DNA methylation in HPV-associated cervical neoplasia, testing ~2 million loci throughout the human genome in biopsies from 78 HPV+ women, identifying changes starting in early CIN and maintained through carcinogenesis. We identified loci at which DNA methylation is consistently altered, beginning early in the course of neoplastic disease and progressing with disease advancement. DNA methylation profiles for cervical biopsies of 19 normals, 20 CIN1, 16 CIN2/3, and 23 cervical cancers.

2016-08-22 | E-GEOD-76986 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data