Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: Analysis of the mp clv3 transcriptome profile in Arabidopsis

PROVIDER: PRJNA309649 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3115174_1.fastq.gz	Fastqsanger.gz
	SRR3115174_2.fastq.gz	Fastqsanger.gz
	SRR3115175_1.fastq.gz	Fastqsanger.gz
	SRR3115175_2.fastq.gz	Fastqsanger.gz
	SRR3115176_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Arabidopsis thaliana

Project description:Analysis of transcriptome between clv3 and mpclv3

| PRJNA360385 | ENA

Analysis of the mp clv3 transcriptome profile in Arabidopsis

Project description:Due to the major limitation of small set of stem cells located in the Shoot Apical Meristem (SAM), it is difficult to perform the whole genome analysis specific for those stem cells. Here, we generated the mp clv3 double mutant with a larger Shoot Apical Meristem,in which shoot stem cells were drastically enriched while the differentiation of stem cells was blocked. Then we performed the mRNA profiling on wild type and mp clv3 double mutant. And this could offer an ideal genetic material to highly increase the resolution of plant shoot stem cell profiling, also to further explore the mechanism of plant stem-cell regulation.

2021-06-24 | GSE77169 | GEO

Arabidopsis thaliana

Project description:Arabidopsis thaliana Inflorescence Meristem Col-0, crn-10 & clv3-20 RNA-Seq

| PRJNA661065 | ENA

Analysis of transcriptome between clv3 and mpclv3

Project description:The targets of AUXIN REPONSE FACTOR5/MONOPTEROS (ARF5/MP) were reported in many studies which mainly concerned to the flower initiation. But most of these targets are expressed in periphery zone (PZ), how MP regulate the stem-cell activity is unclear. In order to specifically identify the targets of MP in stem cells, as clv3 mutant enrich lots of stem cells, thus we performed transcriptomes of clv3 and mpclv3. This method will enhance the resolution of MP targets specific in stem cells. And it will also avoid the severe morphologic difference between WT and mp single mutant.

2018-12-04 | GSE93232 | GEO

Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection

Project description:Macrophomina phaseolina (Mp) is a soil-borne pathogenic fungus known to infect more than 500 plants species including important crops. Here we report the use of a novel agar plate-based pathosystem using the model plant Arabidopsis thaliana (Arabidopsis) to study plant defense reponses to Mp, specifically a comparison between wild type Col-0 and double mutant ein2/jar1 roots with and without Mp infection, at two time points, by RNA-seq.

2020-01-08 | GSE127574 | GEO

Arabidopsis thaliana

Project description:Analysis of the RDR6-dependent ein5 ski2 transcriptome profile in Arabidopsis

| PRJNA227808 | ENA

Arabidopsis thaliana

Project description:ARF5/MP responsive genes in the vascular cambium of Arabidopsis

| PRJNA381808 | ENA

Arabidopsis thaliana

Project description:Effect of overexpression of Arabidopsis Dof5.8 from the MP promoter.

| PRJNA207827 | ENA

Arabidopsis thaliana

Project description:Transcriptome analysis of Arabidopsis