Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli str. K-12 substr. MG1655

ABSTRACT: Droplet based MDA DNA sequencing

PROVIDER: PRJNA312675 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3226040_1.fastq.gz	Fastqsanger.gz
	SRR3226040_2.fastq.gz	Fastqsanger.gz
	SRR3226041_1.fastq.gz	Fastqsanger.gz
	SRR3226041_2.fastq.gz	Fastqsanger.gz
	SRR3226042_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655

Project description:Expression profiles of wild-type and SgrR mutant E. coli strains under aMG and 2-DG-induced stress. Expression profiles of E. coli overexpressing SgrS sRNA.

2013-03-26 | GSE45443 | GEO

RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655

Project description:Expression profiles of wild-type and SgrR mutant E. coli strains under aMG and 2-DG-induced stress. Expression profiles of E. coli overexpressing SgrS sRNA. Illumina RNA-Seq of total RNA extracted from wild-type, SgrR/SgrS mutant and SgrS overexpressing E. coli strains grown in different conditions.

2013-03-26 | E-GEOD-45443 | biostudies-arrayexpress

YAMAT-seq of mature tRNA pools in the bacterium Escherichia coli str. K-12 substr. MG1655 and derivatives

Project description:Mature tRNA pools were measured using an adaptation of YAMAT-seq (Shigematsu et al., 2017; doi:10.1093/nar/gkx005 ) and further described in (Ayan et al., 2020; doi:10.7554/eLife.57947) in 10 strain-medium combinations (all strains dervied from the model bacterium E. coli MG1655). The aim of the experiment was to investigate the effect of reducing tRNA gene copy number on mature tRNA pools in rich and poor media.

2022-12-02 | GSE198606 | GEO

Escherichia coli str. K-12 substr. MG1655

Project description:SAGs of E. coli str. K-12 substr. MG1655 from MDA volume reduction testing

| PRJNA900537 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:DNA Punch Cards for Storing Data on Native DNA Sequences via Enzymatic Nicking

| PRJNA612868 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:Sort-Seq regulatory DNA sequencing in E coli

| PRJNA415611 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:In vivo probing of the DNA-binding Architecture by bacterial arginine repressor

| PRJNA258521 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:The Nucleoid Protein Dps Binds Genomic DNA of Escherichia coli in a Non-random Manner

| PRJNA396582 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:RNA-seq to investigate bacterial responses to expression of a sequence-specific mobile DNA methyltransferase

| PRJDB3140 | ENA

The PurR regulon in Escherichia coli K-12 MG1655.

Project description:The PurR transcription factor plays a critical role in transcriptional regulation of purine metabolism in enterobacteria. Here, we elucidate the role of PurR under exogenous adenine stimulation at the genome-scale using high-resolution chromatin immunoprecipitation (ChIP)-chip and gene expression data obtained under in vivo conditions. Analysis of microarray data revealed that adenine stimulation led to changes in transcript level of about 10% of Escherichia coli genes, including the purine biosynthesis pathway. The E. coli strain lacking the purR gene showed that a total of 56 genes are affected by the deletion. From the ChIP-chip analysis, we determined that over 73% of genes directly regulated by PurR were enriched in the biosynthesis, utilization and transport of purine and pyrimidine nucleotides, and 20% of them were functionally unknown. Compared to the functional diversity of the regulon of the other general transcription factors in E. coli, the functions and size of the PurR regulon are limited.

| S-EPMC3159470 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data